- SCNseq – Determine the circadian expression profile in the SCN for a given gene
- 3D SCN Atlas – Different cell types and their spatial localizations in SCN
- Allen Brain Atlas.
- Mouse Brain Atlas – The mouse brain in stereotaxic coordinates by Matt Gaidica.
- GenSat – Gene expression profiling.
- CIRCA – Circadian gene expression in multiple cell and tissue types.
- BioGPS – Gene expression profiling.
- Mouse Genome Information.
- Ye Zhang’s glial gene expression database.
- Circadianomics – Daily measures of metabolomes and more.
- CirGRDB – Circadian genes and their regulators throughout the genome.
- JCN Antibody Registry – A database for validated antibodies.
- Flp Line. A detailed list of Flp lines with linked repositories and publications, compiled by Stanford University.