Jennifer Alexander-Brett, MD, PhD

Jennifer Alexander-Brett, MD, PhD

Assistant Professor of Medicine, Pulmonary & Critical Care

Our research focuses on respiratory mucosal immunology, with a particular interest in intercellular crosstalk mediated by cytokines and extracellular vesicles. We employ a broad array of techniques including multi-omics analysis, protein biochemistry and cellular immunobiology to study mechanism in the airway diseases COPD, asthma, cystic fibrosis and lung transplant rejection.

Alexander-Brett Lab website »

Farners Amargant i Riera, PhD

Farners Amargant i Riera, PhD

Assistant Professor of Obstetrics & Gynecology

The Riera Lab uses a multidisciplinary approach to investigate how biochemical and biomechanical signaling from the ovary regulates folliculogenesis and oocyte quality, and whether these mechanisms are altered in reproductive-associated diseases such as PCOS and aging.

Riera Lab website »

Rajendra Apte, MD, PhD

Rajendra Apte, MD, PhD

Professor, Department of Ophthalmology and Visual Sciences, Department of Developmental Biology

Research in the Apte lab is focused on innate immunity and immune effector mechanisms in the retina, oxidative stress and cell death, models of developmental angiogenesis and neovascularization, inflammation and photoreceptor survival, and macular degeneration.

Apte website »

Rita Brookheart, PhD

Rita Brookheart, PhD

Assistant Professor, Medicine

The Brookheart Lab focuses on the intersection of metabolism and stress responses in the context of aging and metabolic disease. We use basic and translational tools to identify and investigate regulators of metabolism important in controlling cell differentiation and function, as well as organ size.

Lab Website »

Grant Challen, PhD

Grant Challen, PhD

Associate Professor, Division of Oncology, Department of Medicine

The Challen lab studies the genetic and epigenetic regulation of blood-forming hematopoietic stem cells (HSCs) with the goal to identify new methods of blood cancer prevention and treatment.

Challen Lab website »

Shiming Chen, PhD

Shiming Chen, PhD

Dr. Bernard and Janet R. Becker Distinguished Professor, Ophthalmology and Visual Sciences

The Chen Lab studies the molecular mechanisms controlling photoreceptor gene expression during photoreceptor development and maintenance in the mammalian retina, and how genetic mutations cause gene mis-regulation and defects in the function and survival of the photoreceptor neurons. They particularly focus on photoreceptor-specific transcription factors, such as CRX. Their ultimate goal is to develop therapeutic strategies for treatment.

Chen Lab website »

Yao Chen, PhD

Yao Chen, PhD

Assistant Professor, Department of Neuroscience; Affiliate, Department of Biomedical Engineering

Neuromodulators such as dopamine, acetylcholine, and neuropeptides have profound effects on neural circuits and behavior. Altered neuromodulation is associated with most psychiatric disorders, major neurodegenerative disorders, and neuromodulatory systems are targets of almost all drugs of abuse. The Chen lab aims to understand how the dynamics of neuromodulators and intracellular signals contribute to the function of neuromodulators, to learning, and to the function of sleep.

Chen lab »

Kyunghee Choi, PhD

Kyunghee Choi, PhD

Professor, Department of Pathology & Immunology

The Choi lab studies the molecular mechanisms regulating vascular and hematopoietic specification and development.

Choi Lab website »

Matthew Ciorba, MD

Matthew Ciorba, MD

Associate Professor, Division of Gastroenterology, Department of Medicine

The Ciorba lab researches Intestinal inflammation and colon cancer.

Ciorba lab website »

Brian Clark, PhD

Brian Clark, PhD

Assistant Professor, Department of Ophthalmology and Visual Sciences, Department of Developmental Biology

The Clark lab is interested in understanding the molecular mechanisms underlying retinal neurogenesis and cell fate determination. Using a suite of profiling techniques, we seek to understand the gene expression and epigenetic changes governing retinal development.

Clark lab website »

Joseph Corbo, MD, PhD

Joseph Corbo, MD, PhD

Professor, Department of Pathology and Immunology

The Corbo lab studies the transcriptional regulatory networks that underlie the development, evolution, and diseases of photoreceptors.

Corbo Lab website »

Aaron DiAntonio, MD, PhD

Aaron DiAntonio, MD, PhD

Professor, Department of Developmental Biology

The DiAntonio lab investigates the molecular mechanisms underlying neurodegeneration and neuroinflammation using genetic, molecular, cell biological, and neuroanatomical techniques in both human stem cell-derived neurons and animal models. Their goal is to translate fundamental mechanistic insights into novel treatments for neurological disease.

The DiAntonio lab is ideal for students interested in MD/PhD programs or PhD students interested in the intersection between fundamental research and the development of novel therapies. Applicants with some previous research experience are preferred.

DiAntonio Lab website »

Sabine M Dietmann, PhD

Sabine M Dietmann, PhD

Assistant Professor of Developmental Biology and Medicine, School of Medicine

The Dietmann Lab specializes in the development of integrative multi-omics and machine learning approaches to the complex data sets generated by single-cell sequencing technologies in developmental biology and medicine. Her research has focused on the epigenetic landscape of embryonic stem cells and in vitro systems of human development.

Dietmann Lab website »

Naomi Dirckx, PhD

Naomi Dirckx, PhD

Assistant Professor, Department of Orthopedic Surgery

My research interests revolve around the investigation of a crucial TCA metabolite called citrate and its plasma-membrane transporter, SLC13A5. Utilizing murine models, my lab will study the role of SLC13A5-mediated cellular citrate import in bone mineralization throughout growth and aging, while also investigating the systemic implications of altered citrate partitioning in skeletal tissues by targeting osteogenic citrate metabolism. In addition, I’m also interested in elucidating the molecular mechanisms behind SLC13A5 epilepsy, a rare human disease with loss-of-function mutations in SLC13A5, causing childhood epilepsy, developmental delays, hypotonic muscles and amelogenesis imperfecta.

David Gutmann, MD, PhD

David Gutmann, MD, PhD

Professor, Department of Neurology

The Gutmann lab studies the genetic, cellular and molecular causes for neurodevelopmental disabilities and brain tumorigenesis using novel genetically engineered mouse and human iPSC models.

Gutmann Lab website »

Claudia Han, PhD

Claudia Han, PhD

Assistant Professor, Department of Pathology & Immunology

Microglia are resident macrophages of the brain that engage in a variety of processes essential for brain development and homeostasis. Microglia dysfunction contributes to the pathogenesis of neurodegenerative diseases and neurodevelopmental conditions. My research program investigates microglia phenotypes in these neuropathologies through the lens of epigenomics and transcriptomics. Particularly, I am interested in identifying and modifying the microglial gene regulatory networks that respond to changes in the brain environment through the use of mouse genetic models, humanized mice models and iPSCs.

Lab Website »

Jing Hughes

Jing Hughes

Assistant Professor, Division of Endocrinology, Metabolism & Lipid Research

We study how the primary cilium, sensory antenna of the cell, regulates signaling and secretory functions in the pancreatic islet.

Hughes Lab website »

Benjamin Humphreys, MD, PhD

Benjamin Humphreys, MD, PhD

Professor and Chief, Division of Nephrology, Department of Medicine

The Humphreys Lab investigates kidney injury, regeneration and fibrosis using single cell transcriptomic, epigenomic and spatial techniques, pluripotent stem cell-derived kidney organoids, mouse models and human tissue. Successful applicants will have the opportunity to learn wet lab approaches including single cell pipelines and may receive computational training depending on interest and experience.

Humphreys lab website »

 

Sanjay Jain, MD, PhD

Sanjay Jain, MD, PhD

Associate Professor, Division of Nephrology, Department of Medicine

The Jain lab studies the molecular and cellular mechanisms that regulate maintenance, differentiation and function of kidney progenitors in normal development and disease states.

Jain Lab website »

Sheng Chih (Peter)  Jin, PhD

Sheng Chih (Peter) Jin, PhD

Assistant Professor, Department of Genetics

Research in the Jin lab is devoted to identifying the genes and elucidating the molecular, cellular, and developmental mechanisms that drive the development of specific neurodevelopmental disorders, including congenital hydrocephalus, cerebral palsy, and Moyamoya disease.

Jin Lab website »

Aaron Johnson, PhD

Aaron Johnson, PhD

Assistant Professor, Department of Developmental Biology

The Johnson lab develops and uses a variety of functional genetic approaches to gain deep mechanistic understanding into the processes controlling muscle development, regeneration, and disease.

Johnson Lab website »

 

Yoon-A Kang, PhD

Yoon-A Kang, PhD

Assistant Professor, Department of Medicine, Division of Hematology

The Kang lab's research interests are understanding the mechanisms underlying cell fate decision and lineage specification in hematopoietic stem cells and multipotent progenitors to modulate lineage output in disease and aging contexts.

Kang lab website »

Celeste Karch, PhD

Celeste Karch, PhD

Professor, Department of Psychiatry

The Karch lab studies the molecular mechanisms underlying neurodegenerative tauopathies.

Karch Lab website »

Miriam Kim, MD

Miriam Kim, MD

Assistant Professor, Oncology

Focused research on rational manipulation of human hematopoietic cells for the treatment of disease by combining genetically engineered hematopoietic stem cells and chimeric antigen receptor T cells for therapy of acute myeloid leukemia.

Faculty Profile »

Eynav Klechevsky, PhD

Eynav Klechevsky, PhD

Associate Professor, Immunology

The Klechevsky Lab investigates the role of dendritic cell subsets in both healthy and diseased tissues, as well as the environmental cues that regulate their development, with the goal of developing novel immunotherapy approaches to combat cancer and autoimmune diseases.

Lab Website »

Kristen Kroll, PhD

Kristen Kroll, PhD

Professor, Department of Developmental Biology

The Kroll lab uses human stem cell and mouse models to study transcriptional and epigenetic regulation of brain development and its disruption to cause neurodevelopmental disorders, including autism and intellectual disability syndromes.

Kroll Lab website »

Kory Lavine, MD, PhD

Kory Lavine, MD, PhD

Professor, Department of Medicine, Division of Cardiology, Department of Developmental Biology

The overarching goal of the Lavine laboratory is to identify disease mechanisms that contribute to the pathogenesis of heart failure and design novel strategies to effectively treat these important diseases. They focus on two important areas: precision therapies for heart failure and immune cell heterogeneity and ontogeny.

Lavine Lab Website »

Tristan  Qingyun Li, PhD

Tristan Qingyun Li, PhD

Assistant Professor, Department of Neuroscience, Department of Genetics

The Li laboratory is broadly interested in neuroimmunology with a focus on microglial biology. Particularly, the lab is interested in combining cutting-edge single-cell genomic technologies with in vitro and in vivo genetic, molecular and cellular tools to investigate microglial development, heterogeneity and mechanisms of neuro-immune interactions underlying brain structure and disease. We try to address two major questions: (1) how microglia (and other immune cells) are different in development, aging and neurodegeneration, and related to that, how these different populations of microglia interact with other neural cells to control brain structure and functioning; (2) how microglial fate is specified and diverged from other tissue macrophages during early embryonic development. By studying these questions, the overarching goal is to gain a better understanding of microglial functions in the establishment of the nervous system, as well as how changes in these functions contribute to neurological diseases.

Li Lab website »

Helen McNeill, PhD

Helen McNeill, PhD

Professor, Department of Developmental Biology

The McNeill lab studies how tissue growth and patterning are regulated in normal development, and how disruptions lead to disease. Current projects focus on Nemp proteins in metazoan fertility and the Fat/Hippo pathway in flies and mice.

McNeill Lab website »

Michael P. Meers, PhD

Michael P. Meers, PhD

Assistant Professor, Department of Genetics

The Meers Lab studies how transcription factors interact with and overcome barriers presented by chromatin landscapes to specify developmental and cellular reprogramming outcomes. To do so, we develop cutting-edge epigenomics techniques to map transcription factor binding and chromatin structure in the same context at high resolution. We further use these tools and the insights gained from them to better understand the etiology of a range of cancers whose pathogenesis centers on the global dysregulation of chromatin landscapes.

Meers Lab website »

Gretchen Meyer, PhD

Gretchen Meyer, PhD

Assistant Professor, Program in Physical Therapy; Affiliate, Department of Biomedical Engineering

The Meyer lab focuses on understanding how changes at the cellular level in skeletal muscle affect muscle structure and function, and, in turn, how pathological changes in muscle affect cellular processes. In particular, their research investigates fat’s effect on muscle function and how that effect is regulated at cellular and tissue levels.

Meyer lab website »

Timothy Miller, MD, PhD

Timothy Miller, MD, PhD

Professor, Department of Neurology

The Miller Laboratory is dedicated to understanding neurodegenerative diseases such as amyotrophic lateral sclerosis (ALS) and dementias in order to develop new, effective, and safe treatments. They focus on translational neuroscience, new therapeutic approaches for neurodegenerative diseases, and precision medicine.

Miller lab website »

Jeffrey Millman, PhD

Jeffrey Millman, PhD

Professor, Division of Endocrinology, Metabolism, and Lipid Research, Department of Medicine; Department of Biomedical Engineering

The Millman lab investigates novel stem cell technology and biomedical engineering approaches for the treatment of diabetes.

Millman Lab website »

Mayssa Mokalled, PhD

Mayssa Mokalled, PhD

Assistant Professor, Department of Developmental Biology

The Mokalled lab investigates mechanisms of spinal cord regeneration after injury or disease using zebrafish as a primary model.

Mokalled Lab website »

Josh Morgan, PhD

Josh Morgan, PhD

Assistant Professor of Ophthalmology

The Morgan Lab studies the organization, development, degeneration, and regeneration of the synaptic organization of the visual system. We are currently focused on determining the extent to which microcircuitry in the visual thalamus can recover from denervation..

Morgan Lab website »

David Ornitz, MD, PhD

David Ornitz, MD, PhD

Professor, Department of Developmental Biology

The Ornitz lab investigates the functions of Fibroblast Growth Factors (FGFs) and their role in development, homeostasis, tissue regeneration, and response to injury. We primarily use mouse models and cell culture. Our areas of interest include skeletal homeostasis and maintenance of bone mass, postnatal lung development, pulmonary hypertension, and heart failure.

Ornitz Lab website »

B. Duygu Ozpolat, PhD

B. Duygu Ozpolat, PhD

Assistant Professor, Department of Biology, Department of Developmental Biology

If humans lose their reproductive cells (i.e eggs and sperm) they become infertile, in contrast, some animals regenerate their reproductive cells and reproductive organs. The Ozpolat lab's goal is to uncover the mechanisms of reproductive cell and tissue regeneration by identifying the cell types and genes involved in this process, which will inform regenerative medicine approaches.

Ozpolat lab website »

Hua Pan, PhD

Hua Pan, PhD

Associate Professor, Department of Medicine; Affiliate, Department of Biomedical Engineering

The Pan Lab is studying the basic conception, development, and clinical application of novel nanostructures that serve as safe and effective delivery vehicles for therapeutic nucleotides to mitigate diseases including arthritis and cancer treatment induced vital organ injury.

Pan Lab website »

Elizabeth Pollina, PhD

Elizabeth Pollina, PhD

Assistant Professor, Department of Developmental Biology

The Pollina lab leverages new tools and techniques from neuroscience, epigenetics, and genome integrity to advance our understanding of genome fidelity in the nervous system of living organisms. We characterize how diverse environmental stimuli trigger changes in transcription, chromatin, and DNA damage and examine how these dynamic processes go awry in aging and neurological disease.

Lab Website »

Erica L Scheller, DDS, PhD

Erica L Scheller, DDS, PhD

Associate Professor, Department of Medicine; Department of Cell Biology & Physiology; Affiliate, Department of Biomedical Engineering

The Scheller laboratory synthesizes concepts from cell biology, physiology, and bioengineering to study the relationships between the nervous system and the skeleton. They have a directed interest in understanding how neural signals contribute to skeletal homeostasis, and how perturbations to this system contribute to bone loss, impaired healing, and altered regeneration.

Scheller Lab website »

Laura  Schuettpelz, MD, PhD

Laura Schuettpelz, MD, PhD

Professor, Department of Pediatrics, Department of Developmental Biology

Research in the Schuettpelz lab focuses on understanding how inflammatory signals regulate hematopoietic stem cells, and also how these signals can contribute to hematopoietic malignancies.

Schuettpelz lab website »

Lavinia Sheets, PhD

Lavinia Sheets, PhD

Assistant Professor, Department of Otololaryngology, Department of Developmental Biology

The Sheets lab uses zebrafish as a model system to understand how sensory hair cells of the auditory system develop, degenerate, and regenerate. A main focus of the lab is to identify biological pathways that promote nerve regeneration and hair-cell reinnervation with the goal of providing information toward clinical regenerative therapies.

Sheets Lab website »

Hua Shen, PhD

Hua Shen, PhD

Assistant Professor, Department of Orthopedic Surgery

The Shen lab's research mostly focuses on tendon injury, a common and challenging orthopaedic condition that causes pain and long-term functional disability. In collaboration with orthopaedic surgeons and tissue engineers, they use a multidisciplinary approach to study cellular and molecular regulation of tendon homeostasis and healing processes, with a particular interest in developing new stem cell vesicle and small molecule-based therapies. 

Shen Lab website »

Matthew Silva, PhD

Matthew Silva, PhD

Julia and Walter R. Peterson Orthopaedic Research Professor; Affiliate, Department of Biomedical Engineering

The Silva lab studies the mechanical and molecular factors that regulate loading-induced bone formation and bone injury response and repair.

Silva Lab website »

Alison Snyder-Warwick

Alison Snyder-Warwick

Associate Professor of Surgery

Our laboratory studies the neuromuscular junction during embryogenesis, homeostasis, injury and recovery, and aging. We specifically study the roles of terminal Schwann cells in these events and the cells with which they interact.

Faculty Website »

Lilianna Solnica-Krezel, PhD

Lilianna Solnica-Krezel, PhD

Professor and Head, Department of Developmental Biology; Co-Director, Center of Regenerative Medicine; Affiliate, Department of Biomedical Engineering

The Solnica-Krezel lab studies the cellular and molecular genetic mechanisms underlying vertebrate gastrulation in zebrafish and human embryonic stem cells.

Solnica-Krezel Lab website »

Stephen Stone, MD

Stephen Stone, MD

Assistant Professor, Department of Pediatrics

Dr. Stone studies the role of Fibroblast Growth Factors in Severe Insulin Resistance Syndromes. His research uses both murine and stem cell based models to better understand these rare and debilitating conditions, with the ultimate goal of providing new therapies for these patients.

Stone Lab »

Amber Stratman, PhD

Amber Stratman, PhD

Assistant Professor, Department of Cell Biology & Physiology, Department of Developmental Biology

The Stratman lab is broadly interested in how blood vessels form and stabilize during development, and how changes in these processes affect tissue homeostasis and disease.

Stratman lab website »

Thorold Theunissen, PhD

Thorold Theunissen, PhD

Assistant Professor, Department of Developmental Biology

The Theunissen lab investigates the molecular mechanisms regulating distinct pluripotent stem cell states and their applications in regenerative medicine. 

Theunissen Lab website »

Tony Tsai, MD, PhD

Tony Tsai, MD, PhD

Assistant Professor, Department of Developmental Biology; Affiliate, Department of Biomedical Engineering

Why are tissue patterns and shapes so precisely controlled in embryos but not stem cell-derived organoids? Can we learn how to build tissues reproducibly by studying how embryos accomplish this? The Tsai lab uses zebrafish as the primary model to investigate the rules of tissue patterning and morphogenesis. They combine interdisciplinary approaches such as live embryo imaging, CRISPR genetics, single-cell genomics, mechanical assays, and computational modeling.

Tsai Lab website »