CRML – Web interface for locating muscle-specific regulatory modules in C. elegans sequences.

C elegans PhyloNet – Whole Genome Conserved Motifs and Predicted cis-Regulatory Modules in Caenorhabditis elegans

VirusSeeker: a set of fully automated and modular software package designed for mining next generation sequencing data form Illumina platform to identify sequences of viral origin.

VirusHunter : a fully automated and modular software package designed for mining sequence data (454 or long contigs) to identify sequences of microbial origin.