Bjerum CM, Ouattara AF, Aboulaye M, Kouadio O, Marius VK, Andersen BJ, Weil GJ, Koudou BG, King CL. Efficacy and Safety of a Single Dose of Ivermectin, Diethylcarbamazine, and Albendazole for Treatment of Lymphatic Filariasis in Côte d’Ivoire: An Open-label Randomized Controlled Trial. Clin Infect Dis. 2020 Oct 23;71(7):e68-e75. doi: 10.1093/cid/ciz1050. PMID: 31641754.
Jasmer DP, Rosa BA, Tyagi R, Mitreva M. Rapid determination of nematode cell and organ susceptibility to toxic treatments. International Journal for Parasitology: Drugs and Drug Resistance 2020 Dec pg.167-182. doi: 10.1016/j.ijpddr.2020.10.007. Epub 2020 Oct 20.
Xie J, Pang XL, Tarr GAM, Mu Y, Zhuo R, Chui L, Lee BE, Vanderkooi OG, Tarr PI, Ali S, MacDonald SE, Freedman SB. Influenza virus detection in the stool of children with acute gastroenteritis. J Clin Virol. 2020 Oct;131:104565. doi: 10.1016/j.jcv.2020.104565. Epub 2020 Aug 1. PMID: 32810839; PMCID: PMC7494534.
Hertz MI, Rush A, Nutman TB, Weil GJ, Bennuru S, Budge PJ. Characterization of glycan determinants that mediate recognition of the major Wuchereria bancrofti circulating antigen by diagnostic antibodies. Mol Biochem Parasitol. 2020 Sep 20;240:111317. doi: 10.1016/j.molbiopara.2020.111317. Epub ahead of print. PMID: 32961208.
Loukouri A, Méité A, Koudou BG, Goss CW, Lew D, Weil GJ, N’Goran EK, Fischer PU. Impact of annual and semi-annual mass drug administration for Lymphatic Filariasis and Onchocerciasis on Hookworm Infection in Côte d’Ivoire. PLoS Negl Trop Dis. 2020 Sep 25;14(9):e0008642. doi: 10.1371/journal.pntd.0008642. PMID: 32976514; PMCID: PMC7540880.
Campillo JT, Awaca-Uvon NP, Missamou F, Tambwe JP, Kuyangisa-Simuna G, Weil GJ, Louya F, Boussinesq M, Pion SDS, Chesnais CB. Results from two cohort studies in Central Africa show that clearance of Wuchereria bancrofti infection after repeated rounds of mass drug administration with albendazole alone is closely linked to individual adherence. Clin Infect Dis. 2020 Aug 28:ciaa1232. doi: 10.1093/cid/ciaa1232. Epub ahead of print. PMID: 32856050.
Knoop KA, McDonald KG, Coughlin PE, Kulkarni DH, Gustafsson JK, Rusconi B, John V, Ndao IM, Beigelman A, Good M, Warner BB, Elson CO, Hsieh CS, Hogan SP, Tarr PI, Newberry RD. Synchronization of mothers and offspring promotes tolerance and limits allergy. JCI Insight. 2020 Aug 6;5(15):e137943. doi: 10.1172/jci.insight.137943. PMID: 32759496; PMCID: PMC7455068.
Furlong K, Biering SB, Choi J, Wilen CB, Orchard RC, Wobus CE, Nelson CA, Fremont DH, Baldridge MT, Randall G, Hwang S. CD300LF Polymorphisms of Inbred Mouse Strains Confer Resistance to Murine Norovirus Infection in a Cell Type- Dependent Manner. J Virol. 2020 Aug 17;94(17):e00837-20. doi: 10.1128/JVI.00837-20. PMID: 32581099; PMCID: PMC7431780.
Renganathan A, Warner BB, Tarr PI, Dharnidharka VR. The progression of serum cystatin C concentrations within the first month of life after preterm birth-a worldwide systematic review. Pediatr Nephrol. 2020 Aug 5. doi: 10.1007/s00467-020-04543-1. Epub ahead of print. PMID: 32757062.
Makimaa H, Ingle H, Baldridge MT. Enteric Viral Co-Infections: Pathogenesis and Perspective. Viruses. 2020 Aug 18;12(8):904. doi: 10.3390/v12080904. PMID: 32824880; PMCID: PMC7472086.
Tort JF, Mitreva M, Brehm KR, Rinaldi G. Editorial: Novel Frontiers in Helminth Genomics. Front Genet. 2020 Aug 14;11:791. doi: 10.3389/fgene.2020.00791. PMID: 32922432; PMCID: PMC7456986.
Schnadower D, Roskind CG, VanBuren J, Powell EC, Norris J, Tarr PI, Sapien RE, O’Connell KJ, Chun TH, Rogers AJ, Bhatt SR, Mahajan P, Gorelick MH, Vance C, Dean JM, Freedman SB. Factors Associated with Non-Adherence in an Emergency Department Based Multicenter Randomized Clinical Trial of a Probiotic in Children with Acute Gastroenteritis. J Pediatr Gastroenterol Nutr. 2020 Aug 14. doi: 10.1097/MPG.0000000000002904. Epub ahead of print. PMID: 32804911.
Rosa BA, Choi YJ, McNulty SN, Jung H, Martin J, Agatsuma T, Sugiyama H, Le TH, Doanh PN, Maleewong W, Blair D, Brindley PJ, Fischer PU, Mitreva M. Comparative genomics and transcriptomics of 4 Paragonimus species provide insights into lung fluke parasitism and pathogenesis. Gigascience. 2020 Jul 1;9(7):giaa073. doi: 10.1093/gigascience/giaa073. PMID: 32687148; PMCID: PMC7370270.
Parkinson J, Mitreva M, Whitton C, Thomson M, Daub J, Martin J, Schmid R, Hall N, Barrell B, Waterston RH, McCarter JP, Blaxter ML. Author Correction: A transcriptomic analysis of the phylum Nematoda. Nat Genet. 2020 Jul;52(7):750. doi: 10.1038/s41588-020-0658-6. Erratum for: Nat Genet. 2004 Dec;36(12):1259-67. PMID: 32541926.
Tarr GAM, Pang XL, Zhuo R, Lee BE, Chui L, Ali S, Vanderkooi OG, Michaels- Igbokwe C, Tarr PI, MacDonald S, Currie G, MacDonald J, Kim K, Freedman SB. Attribution of Pediatric Acute Gastroenteritis Episodes and Emergency Department Visits to Norovirus GI and GII. J Infect Dis. 2020 Jul 2:jiaa391. doi: 10.1093/infdis/jiaa391. Epub ahead of print. PMID: 32614406.
Bernot JP, Rudy G, Erickson PT, Ratnappan R, Haile M, Rosa BA, Mitreva M, O’Halloran DM, Hawdon JM. Transcriptomic analysis of hookworm Ancylostoma ceylanicum life cycle stages reveals changes in G-protein coupled receptor diversity associated with the onset of parasitism. Int J Parasitol. 2020 Jul;50(8):603-610. doi: 10.1016/j.ijpara.2020.05.003. Epub 2020 Jun 25. PMID: 32592811; PMCID: PMC7454011.
Ammerman E, Sweet SC, Storch GA, Buller RS, Mason S, Conrad C, Hayes D Jr, Faro A, Goldfarb SB, Melicoff E, Schecter M, Visner G, Heeger PS, Mohanakumar T, Williams N, Danziger-Isakov L. Epidemiology and persistence of rhinovirus in pediatric lung transplantation. Transpl Infect Dis. 2020 Jul 19:e13422. doi: 10.1111/tid.13422. Epub ahead of print. PMID: 32686323.
Gunderson EL, Vogel I, Chappell L, Bulman CA, Lim KC, Luo M, Whitman JD, Franklin C, Choi YJ, Lefoulon E, Clark T, Beerntsen B, Slatko B, Mitreva M, Sullivan W, Sakanari JA. The endosymbiont Wolbachia rebounds following antibiotic treatment. PLoS Pathog. 2020 Jul 8;16(7):e1008623. doi: 10.1371/journal.ppat.1008623. PMID: 32639986; PMCID: PMC7371230.
Dubray CL, Sircar AD, Beau de Rochars VM, Bogus J, Direny AN, Ernest JR, Fayette CR, Goss CW, Hast M, O’Brian K, Pavilus GE, Sabin DF, Wiegand RE, Weil GJ, Lemoine JF. Safety and efficacy of co-administered diethylcarbamazine, albendazole and ivermectin during mass drug administration for lymphatic filariasis in Haiti: Results from a two-armed, open-label, cluster-randomized, community study. PLoS Negl Trop Dis. 2020 Jun 8;14(6):e0008298. doi: 10.1371/journal.pntd.0008298. PMID: 32511226; PMCID: PMC7302858.
Pion SDS, Chesnais CB, Awaca-Uvon NP, Vlaminck J, Abdou A, Kunyu-Shako B, Kuyangisa Simuna G, Tambwe JP, Weil GJ, Boussinesq M. The impact of four years of semiannual treatments with albendazole alone on lymphatic filariasis and soil-transmitted helminth infections: A community-based study in the Democratic Republic of the Congo. PLoS Negl Trop Dis. 2020 Jun 23;14(6):e0008322. doi: 10.1371/journal.pntd.0008322. PMID: 32574160; PMCID: PMC7337406.
Logan J, Pearson MS, Manda SS, Choi YJ, Field M, Eichenberger RM, Mulvenna J, Nagaraj SH, Fujiwara RT, Gazzinelli-Guimaraes P, Bueno L, Mati V, Bethony JM, Mitreva M, Sotillo J, Loukas A. Comprehensive analysis of the secreted proteome of adult Necator americanus hookworms. PLoS Negl Trop Dis. 2020 May 26;14(5):e0008237. doi: 10.1371/journal.pntd.0008237. PMID: 32453752; PMCID: PMC7274458.
Gyasi ME, Hong AR, Weil GJ. Motile Onchocerca volvulus Microfilariae in the Anterior Chamber of the Eye. Am J Trop Med Hyg. 2020 May;102(5):921. doi: 10.4269/ajtmh.20-0025. PMID: 32383434; PMCID: PMC7204589.
King CL, Weil GJ, Kazura JW. Single-Dose Triple-Drug Therapy for Wuchereria bancrofti – 5-Year Follow-up. N Engl J Med. 2020 May 14;382(20):1956-1957. doi: 10.1056/NEJMc1914262. PMID: 32402169; PMCID: PMC7175637.
Jasmer DP, Rosa BA, Tyagi R, Bulman CA, Beerntsen B, Urban JF Jr, Sakanari J, Mitreva M. De novo identification of toxicants that cause irreparable damage to parasitic nematode intestinal cells. PLoS Negl Trop Dis. 2020 May 26;14(5):e0007942. doi: 10.1371/journal.pntd.0007942. PMID: 32453724; PMCID: PMC7274465.
Choreño-Parra JA, Bobba S, Rangel-Moreno J, Ahmed M, Mehra S, Rosa B, Martin J, Mitreva M, Kaushal D, Zúñiga J, Khader SA. Mycobacterium tuberculosis HN878 Infection Induces Human-Like B-Cell Follicles in Mice. J Infect Dis. 2020 Apr 27;221(10):1636-1646. doi: 10.1093/infdis/jiz663. PMID: 31832640; PMCID: PMC7184917.
Zhang Y, Shaikh N, Ferey JL, Wankhade UD, Chintapalli SV, Higgins CB, Crowley JR, Heitmeier MR, Stothard AI, Mihi B, Good M, Higashiyama T, Swarts BM, Hruz PW, Shankar K, Tarr PI, DeBosch BJ. Lactotrehalose, an Analog of Trehalose, Increases Energy Metabolism Without Promoting Clostridioides difficile Infection in Mice. Gastroenterology. 2020 Apr;158(5):1402-1416.e2. doi: 10.1053/j.gastro.2019.11.295. Epub 2019 Dec 12. PMID: 31838076; PMCID: PMC7103499.
Knoop KA, Coughlin PE, Floyd AN, Ndao IM, Hall-Moore C, Shaikh N, Gasparrini AJ, Rusconi B, Escobedo M, Good M, Warner BB, Tarr PI, Newberry RD. Maternal activation of the EGFR prevents translocation of gut-residing pathogenic Escherichia coli in a model of late-onset neonatal sepsis. Proc Natl Acad Sci U S A. 2020 Apr 7;117(14):7941-7949. doi: 10.1073/pnas.1912022117. Epub 2020 Mar 16. PMID: 32179676; PMCID: PMC7148560.
Graziano VR, Walker FC, Kennedy EA, Wei J, Ettayebi K, Strine MS, Filler RB, Hassan E, Hsieh LL, Kim AS, Kolawole AO, Wobus CE, Lindesmith LC, Baric RS, Estes MK, Orchard RC, Baldridge MT, Wilen CB. CD300lf is the primary physiologic receptor of murine norovirus but not human norovirus. PLoS Pathog. 2020 Apr 6;16(4):e1008242. doi: 10.1371/journal.ppat.1008242. PMID: 32251490; PMCID: PMC7162533.
Ordiz MI, Janssen S, Humphrey G, Ackermann G, Stephenson K, Agapova S, Divala O, Kaimila Y, Maleta K, Zhong C, Knight R, Trehan I, Tarr PI, Rusconi B, Manary MJ. The effect of legume supplementation on the gut microbiota in rural Malawian infants aged 6 to 12 months. Am J Clin Nutr. 2020 Apr 1;111(4):884-892. doi: 10.1093/ajcn/nqaa011. PMID: 32047925.
McKee RS, Schnadower D, Tarr PI, Xie J, Finkelstein Y, Desai N, Lane RD, Bergmann KR, Kaplan RL, Hariharan S, Cruz AT, Cohen DM, Dixon A, Ramgopal S, Rominger A, Powell EC, Kilgar J, Michelson KA, Beer D, Bitzan M, Pruitt CM, Yen K, Meckler GD, Plint AC, Bradin S, Abramo TJ, Gouin S, Kam AJ, Schuh A, Balamuth F, Hunley TE, Kanegaye JT, Jones NE, Avva U, Porter R, Fein DM, Louie JP, Freedman SB; Pediatric Emergency Medicine Collaborative Research Committee and Pediatric Emergency Research Canada. Predicting Hemolytic Uremic Syndrome and Renal Replacement Therapy in Shiga Toxin-producing Escherichia coli-infected Children. Clin Infect Dis. 2020 Apr 10;70(8):1643-1651. doi: 10.1093/cid/ciz432. PMID: 31125419.
Freedman SB, Schnadower D, Tarr PI. The Probiotic Conundrum: Regulatory Confusion, Conflicting Studies, and Safety Concerns. JAMA. 2020 Mar 3;323(9):823-824. doi: 10.1001/jama.2019.22268. PMID: 32125410.
Lee AG, Scott JM, Fabbrizi MR, Jiang X, Sojka DK, Miller MJ, Baldridge MT, Yokoyama WM, Shin H. T cell response kinetics determines neuroinfection outcomes during murine HSV infection. JCI Insight. 2020 Mar 12;5(5):e134258. doi: 10.1172/jci.insight.134258. PMID: 32161194; PMCID: PMC7141405.
Hardy M, Samuela J, Kama M, Tuicakau M, Romani L, Whitfeld MJ, King CL, Weil GJ, Grobler AC, Robinson LJ, Kaldor JM, Steer AC. The safety of combined triple drug therapy with ivermectin, diethylcarbamazine and albendazole in the neglected tropical diseases co-endemic setting of Fiji: A cluster randomised trial. PLoS Negl Trop Dis. 2020 Mar 16;14(3):e0008106. doi: 10.1371/journal.pntd.0008106. PMID: 32176703; PMCID: PMC7098623.
Patel R, Babady E, Theel ES, Storch GA, Pinsky BA, St George K, Smith TC, Bertuzzi S. Report from the American Society for Microbiology COVID-19 International Summit, 23 March 2020: Value of Diagnostic Testing for SARS- CoV-2/COVID-19. mBio. 2020 Mar 26;11(2):e00722-20. doi: 10.1128/mBio.00722-20. PMID: 32217609; PMCID: PMC7157705.
Rosa BA, Mihindukulasuriya K, Hallsworth-Pepin K, Wollam A, Martin J, Snowden C, Dunne WM Jr, Weinstock GM, Burnham CA, Mitreva M. Improving Characterization of Understudied Human Microbiomes Using Targeted Phylogenetics. mSystems. 2020 Feb 25;5(1):e00096-20. doi: 10.1128/mSystems.00096-20. PMID: 32098835; PMCID: PMC7043343.
Tarr GAM, Lin CY, Vandermeer B, Lorenzetti DL, Tarr PI, Chui L, Hartling L, Freedman SB. Diagnostic Test Accuracy of Commercial Tests for Detection of Shiga Toxin-Producing Escherichia coli: A Systematic Review and Meta-Analysis. Clin Chem. 2020 Feb 1;66(2):302-315. doi: 10.1093/clinchem/hvz006. PMID: 32040589.
Wang YT, Zaitsev K, Lu Q, Li S, Schaiff WT, Kim KW, Droit L, Wilen CB, Desai C, Balce DR, Orchard RC, Orvedahl A, Park S, Kreamalmeyer D, Handley SA, Pfeifer JD, Baldridge MT, Artyomov MN, Stallings CL, Virgin HW. Select autophagy genes maintain quiescence of tissue-resident macrophages and increase susceptibility to Listeria monocytogenes. Nat Microbiol. 2020 Feb;5(2):272-281. doi: 10.1038/s41564-019-0633-0. Epub 2020 Jan 20. PMID: 31959973; PMCID: PMC7147835.
Kuttiatt VS, Somani RK, Swaminathan S, Krishnamoorthy K, Weil GJ, Purushothaman J. Frequency and Clinical Significance of Localized Adverse Events following Mass Drug Administration for Lymphatic Filariasis in an Endemic Area in South India. Am J Trop Med Hyg. 2020 Jan;102(1):96-99. doi: 10.4269/ajtmh.19-0532. PMID: 31769393; PMCID: PMC6947773.
Grau KR, Zhu S, Peterson ST, Helm EW, Philip D, Phillips M, Hernandez A, Turula H, Frasse P, Graziano VR, Wilen CB, Wobus CE, Baldridge MT, Karst SM. The intestinal regionalization of acute norovirus infection is regulated by the microbiota via bile acid-mediated priming of type III interferon. Nat Microbiol. 2020 Jan;5(1):84-92. doi: 10.1038/s41564-019-0602-7. Epub 2019 Nov 25. PMID: 31768030; PMCID: PMC6925324.
Ahmed M, Thirunavukkarasu S, Rosa BA, Thomas KA, Das S, Rangel-Moreno J, Lu L, Mehra S, Mbandi SK, Thackray LB, Diamond MS, Murphy KM, Means T, Martin J, Kaushal D, Scriba TJ, Mitreva M, Khader SA. Immune correlates of tuberculosis disease and risk translate across species. Sci Transl Med. 2020 Jan 29;12(528):eaay0233. doi: 10.1126/scitranslmed.aay0233. PMID: 31996462; PMCID: PMC7354419.
Liu TC, VanBuskirk K, Ali SA, Kelly MP, Holtz LR, Yilmaz OH, Sadiq K, Iqbal N, Amadi B, Syed S, Ahmed T, Moore S, Ndao IM, Isaacs MH, Pfeifer JD, Atlas H, Tarr PI, Denno DM, Moskaluk CA. A novel histological index for evaluation of environmental enteric dysfunction identifies geographic-specific features of enteropathy among children with suboptimal growth. PLoS Negl Trop Dis. 2020 Jan 13;14(1):e0007975. doi: 10.1371/journal.pntd.0007975. PMID: 31929525; PMCID: PMC6980693.
Choi YJ, Fontenla S, Fischer PU, Le TH, Costábile A, Blair D, Brindley PJ, Tort JF, Cabada MM, Mitreva M. Adaptive Radiation of the Flukes of the Family Fasciolidae Inferred from Genome-Wide Comparisons of Key Species. Mol Biol Evol. 2020 Jan 1;37(1):84-99. doi: 10.1093/molbev/msz204. PMID: 31501870; PMCID: PMC7528651.
Zhou Y, Jackson D, Bacharier LB, Mauger D, Boushey H, Castro M, Durack J, Huang Y, Lemanske RF Jr, Storch GA, Weinstock GM, Wylie K, Covar R, Fitzpatrick AM, Phipatanakul W, Robison RG, Beigelman A. The upper-airway microbiota and loss of asthma control among asthmatic children. Nat Commun. 2019 Dec 16;10(1):5714. doi: 10.1038/s41467-019-13698-x. PMID: 31844063; PMCID: PMC6915697.
Lee S, Baldridge MT. Viruses RIG up intestinal immunity. Nat Immunol. 2019 Dec;20(12):1563-1564. doi: 10.1038/s41590-019-0530-y. PMID: 31636465.
Gasparrini AJ, Wang B, Sun X, Kennedy EA, Hernandez-Leyva A, Ndao IM, Tarr PI, Warner BB, Dantas G. Persistent metagenomic signatures of early-life hospitalization and antibiotic treatment in the infant gut microbiota and resistome. Nat Microbiol. 2019 Dec;4(12):2285-2297. doi: 10.1038/s41564-019-0550-2. Epub 2019 Sep 9. PMID: 31501537; PMCID: PMC6879825.
Labuda LA, Adegnika AA, Rosa BA, Martin J, Ateba-Ngoa U, Amoah AS, Lima HM, Meurs L, Mbow M, Manurung MD, Zinsou JF, Smits HH, Kremsner PG, Mitreva M, Yazdanbakhsh M. A praziquantel treatment study of immune and transcriptome profiles in Schistosoma haematobium-infected Gabonese schoolchildren. J Infect Dis. 2019 Dec 17:jiz641. doi: 10.1093/infdis/jiz641. Epub ahead of print. PMID: 31844885.
Maqsood R, Rodgers R, Rodriguez C, Handley SA, Ndao IM, Tarr PI, Warner BB, Lim ES, Holtz LR. Discordant transmission of bacteria and viruses from mothers to babies at birth. Microbiome. 2019 Dec 10;7(1):156. doi: 10.1186/s40168-019-0766-7. PMID: 31823811; PMCID: PMC6902606.
Fauver JR, Martin J, Weil GJ, Mitreva M, Fischer PU. De novo Assembly of the Brugia malayi Genome Using Long Reads from a Single MinION Flowcell. Sci Rep. 2019 Dec 20;9(1):19521. doi: 10.1038/s41598-019-55908-y. PMID: 31863009; PMCID: PMC6925183.
Sweet SC, Chin H, Conrad C, Hayes D Jr, Heeger PS, Faro A, Goldfarb S, Melicoff-Portillo E, Mohanakumar T, Odim J, Schecter M, Storch GA, Visner G, Williams NM, Kesler K, Danziger-Isakov L. Absence of evidence that respiratory viral infections influence pediatric lung transplantation outcomes: Results of the CTOTC-03 study. Am J Transplant. 2019 Dec;19(12):3284-3298. doi: 10.1111/ajt.15505. Epub 2019 Jul 25. PMID: 31216376; PMCID: PMC6883118.
Tarr GAM, Tarr PI, Freedman SB. Clinical interpretation of enteric molecular diagnostic tests. Clin Microbiol Infect. 2019 Dec;25(12):1454-1456. doi: 10.1016/j.cmi.2019.08.018. Epub 2019 Sep 3. PMID: 31491461.
Martin I, Kaisar MMM, Wiria AE, Hamid F, Djuardi Y, Sartono E, Rosa BA, Mitreva M, Supali T, Houwing-Duistermaat JJ, Yazdanbakhsh M, Wammes LJ. The Effect of Gut Microbiome Composition on Human Immune Responses: An Exploration of Interference by Helminth Infections. Front Genet. 2019 Nov 6;10:1028. doi: 10.3389/fgene.2019.01028. PMID: 31781154; PMCID: PMC6856646.
Kuhlmann FM, Martin J, Hazen TH, Vickers TJ, Pashos M, Okhuysen PC, Gómez- Duarte OG, Cebelinski E, Boxrud D, Del Canto F, Vidal R, Qadri F, Mitreva M, Rasko DA, Fleckenstein JM. Conservation and global distribution of non-canonical antigens in Enterotoxigenic Escherichia coli. PLoS Negl Trop Dis. 2019 Nov 22;13(11):e0007825. doi: 10.1371/journal.pntd.0007825. PMID: 31756188; PMCID: PMC6897418.
Hassan E, Baldridge MT. Norovirus encounters in the gut: multifaceted interactions and disease outcomes. Mucosal Immunol. 2019 Nov;12(6):1259-1267. doi: 10.1038/s41385-019-0199-4. Epub 2019 Sep 9. PMID: 31501514; PMCID: PMC7479810.
Zambruni M, Ochoa TJ, Somasunderam A, Cabada MM, Morales ML, Mitreva M, Rosa BA, Acosta GJ, Vigo NI, Riveros M, Arango S, Durand D, Berends MN, Melby P, Utay NS. Stunting Is Preceded by Intestinal Mucosal Damage and Microbiome Changes and Is Associated with Systemic Inflammation in a Cohort of Peruvian Infants. Am J Trop Med Hyg. 2019 Nov;101(5):1009-1017. doi: 10.4269/ajtmh.18-0975. PMID: 31482782; PMCID: PMC6838574.
Alvarado DM, Chen B, Iticovici M, Thaker AI, Dai N, VanDussen KL, Shaikh N, Lim CK, Guillemin GJ, Tarr PI, Ciorba MA. Epithelial Indoleamine 2,3-Dioxygenase 1 Modulates Aryl Hydrocarbon Receptor and Notch Signaling to Increase Differentiation of Secretory Cells and Alter Mucus-Associated Microbiota. Gastroenterology. 2019 Oct;157(4):1093-1108.e11. doi: 10.1053/j.gastro.2019.07.013. Epub 2019 Jul 17. PMID: 31325428; PMCID: PMC6756966.
Xie Y, Matsumoto H, Kennedy S, Newberry EP, Moritz W, DeBosch BJ, Moley KH, Rubin DC, Warner BW, Kau AL, Tarr PI, Wylie TN, Wylie KM, Davidson NO. Impaired Chylomicron Assembly Modifies Hepatic Metabolism Through Bile Acid-Dependent and Transmissible Microbial Adaptations. Hepatology. 2019 Oct;70(4):1168-1184. doi: 10.1002/hep.30669. Epub 2019 May 23. PMID: 31004524; PMCID: PMC6783349.
Tarr GAM, Stokowski T, Shringi S, Tarr PI, Freedman SB, Oltean HN, Rabinowitz PM, Chui L. Contribution and Interaction of Shiga Toxin Genes to Escherichia coli O157:H7 Virulence. Toxins (Basel). 2019 Oct 18;11(10):607. doi: 10.3390/toxins11100607. PMID: 31635282; PMCID: PMC6832461.
Tarr GAM, Shringi S, Oltean HN, Mayer J, Rabinowitz P, Wakefield J, Tarr PI, Besser TE, Phipps AI. Importance of case age in the purported association between phylogenetics and hemolytic uremic syndrome in Escherichia coli O157:H7 infections. Epidemiol Infect. 2018 Sep;146(12):1550-1555. doi: 10.1017/S0950268818001632. Epub 2018 Jun 19. Erratum in: Epidemiol Infect. 2019 Oct 21;147:e290. PMID: 29914582; PMCID: PMC6092231.
Schwimmer JB, Johnson JS, Angeles JE, Behling C, Belt PH, Borecki I, Bross C, Durelle J, Goyal NP, Hamilton G, Holtz ML, Lavine JE, Mitreva M, Newton KP, Pan A, Simpson PM, Sirlin CB, Sodergren E, Tyagi R, Yates KP, Weinstock GM, Salzman NH. Microbiome Signatures Associated With Steatohepatitis and Moderate to Severe Fibrosis in Children With Nonalcoholic Fatty Liver Disease. Gastroenterology. 2019 Oct;157(4):1109-1122. doi: 10.1053/j.gastro.2019.06.028. Epub 2019 Jun 27. PMID: 31255652; PMCID: PMC6756995.
Peterson ST, Kennedy EA, Brigleb PH, Taylor GM, Urbanek K, Bricker TL, Lee S, Shin H, Dermody TS, Boon ACM, Baldridge MT. Disruption of Type III Interferon (IFN) Genes Ifnl2 and Ifnl3 Recapitulates Loss of the Type III IFN Receptor in the Mucosal Antiviral Response. J Virol. 2019 Oct 29;93(22):e01073-19. doi: 10.1128/JVI.01073-19. PMID: 31462571; PMCID: PMC6819914.
Harris BR, Chinta SS, Colvin R, Schnadower D, Tarr PI, Sayuk GS. Undifferentiated Abdominal Pain in Children Presenting to the Pediatric Emergency Department. Clin Pediatr (Phila). 2019 Oct;58(11-12):1212-1223. doi: 10.1177/0009922819867459. Epub 2019 Aug 6. PMID: 31387380.
Shi Z, Zou J, Zhang Z, Zhao X, Noriega J, Zhang B, Zhao C, Ingle H, Bittinger K, Mattei LM, Pruijssers AJ, Plemper RK, Nice TJ, Baldridge MT, Dermody TS, Chassaing B, Gewirtz AT. Segmented Filamentous Bacteria Prevent and Cure Rotavirus Infection. Cell. 2019 Oct 17;179(3):644-658.e13. doi: 10.1016/j.cell.2019.09.028. Epub 2019 Oct 10. PMID: 31607511; PMCID: PMC7525827.
Zhou C, Yahathugoda C, De Silva L, Rathnapala U, Owen G, Weerasooriya M, Rao RU, Weil GJ, Budge PJ. Portable infrared imaging for longitudinal limb volume monitoring in patients with lymphatic filariasis. PLoS Negl Trop Dis. 2019 Oct 4;13(10):e0007762. doi: 10.1371/journal.pntd.0007762. PMID: 31584959; PMCID: PMC6795459.
Schnadower D, Tarr PI, Freedman SB. Letter: Lactobacillus rhamnosus GG offers no benefit over placebo in children with acute gastroenteritis. Aliment Pharmacol Ther. 2019 Sep;50(5):620-622. doi: 10.1111/apt.15418. PMID: 31414542.
Qian W, Miner CA, Ingle H, Platt DJ, Baldridge MT, Miner JJ. A Human STAT1 Gain-of-Function Mutation Impairs CD8+ T Cell Responses against Gammaherpesvirus 68. J Virol. 2019 Sep 12;93(19):e00307-19. doi: 10.1128/JVI.00307-19. PMID: 31315996; PMCID: PMC6744239.
Andersen BJ, Rosa BA, Kupritz J, Meite A, Serge T, Hertz MI, Curtis K, King CL, Mitreva M, Fischer PU, Weil GJ. Systems analysis-based assessment of post- treatment adverse events in lymphatic filariasis. PLoS Negl Trop Dis. 2019 Sep 26;13(9):e0007697. doi: 10.1371/journal.pntd.0007697. PMID: 31557154; PMCID: PMC6762072.
Tarr GAM, Chui L, Lee BE, Pang XL, Ali S, Nettel-Aguirre A, Vanderkooi OG, Berenger BM, Dickinson J, Tarr PI, Drews S, MacDonald J, Kim K, Freedman SB. Performance of Stool-testing Recommendations for Acute Gastroenteritis When Used to Identify Children With 9 Potential Bacterial Enteropathogens. Clin Infect Dis. 2019 Sep 13;69(7):1173-1182. doi: 10.1093/cid/ciy1021. PMID: 30517612; PMCID: PMC7348586.
Frayman KB, Wylie KM, Armstrong DS, Carzino R, Davis SD, Ferkol TW, Grimwood K, Storch GA, Ranganathan SC. Differences in the lower airway microbiota of infants with and without cystic fibrosis. J Cyst Fibros. 2019 Sep;18(5):646-652. doi: 10.1016/j.jcf.2018.12.003. Epub 2018 Dec 21. PMID: 30580994; PMCID: PMC6586525.
Dorshow RB, Johnson JR, Debreczeny MP, Riley IR, Shieh JJ, Rogers TE, Hall- Moore C, Shaikh N, Rouggly-Nickless LC, Tarr PI. Transdermal fluorescence detection of a dual fluorophore system for noninvasive point-of-care gastrointestinal permeability measurement. Biomed Opt Express. 2019 Sep 13;10(10):5103-5116. doi: 10.1364/BOE.10.005103. PMID: 31646033; PMCID: PMC6788606.
Walker FC, Baldridge MT. Interactions between noroviruses, the host, and the microbiota. Curr Opin Virol. 2019 Aug;37:1-9. doi: 10.1016/j.coviro.2019.04.001. Epub 2019 May 13. PMID: 31096124; PMCID: PMC6768699.
Jasmer DP, Rosa BA, Tyagi R, Mitreva M. Omics Driven Understanding of the Intestines of Parasitic Nematodes. Front Genet. 2019 Jul 25;10:652. doi: 10.3389/fgene.2019.00652. PMID: 31402928; PMCID: PMC6669237.
Goss CW, O’Brian K, Dubray C, Fischer PU, Hardy M, Jambulingam P, King CL, Laman M, Lemoine JF, Robinson LJ, Samuela J, Subramanian S, Supali T, Weil GJ, Schechtman KB. Dosing pole recommendations for lymphatic filariasis elimination: A height-weight quantile regression modeling approach. PLoS Negl Trop Dis. 2019 Jul 17;13(7):e0007541. doi: 10.1371/journal.pntd.0007541. PMID: 31314753; PMCID: PMC6663033.
Wilke G, Funkhouser-Jones LJ, Wang Y, Ravindran S, Wang Q, Beatty WL, Baldridge MT, VanDussen KL, Shen B, Kuhlenschmidt MS, Kuhlenschmidt TB, Witola WH, Stappenbeck TS, Sibley LD. A Stem-Cell-Derived Platform Enables Complete Cryptosporidium Development In Vitro and Genetic Tractability. Cell Host Microbe. 2019 Jul 10;26(1):123-134.e8. doi: 10.1016/j.chom.2019.05.007. Epub 2019 Jun 20. PMID: 31231046; PMCID: PMC6617391.
Chama M, Amadi BC, Chandwe K, Zyambo K, Besa E, Shaikh N, Ndao IM, Tarr PI, Storer C, Head R, Kelly P. Transcriptomic analysis of enteropathy in Zambian children with severe acute malnutrition. EBioMedicine. 2019 Jul;45:456-463. doi: 10.1016/j.ebiom.2019.06.015. Epub 2019 Jun 20. PMID: 31229436; PMCID: PMC6642221.
Tan SK, Huang C, Sahoo MK, Weber J, Kurzer J, Stedman MR, Concepcion W, Gallo AE, Alonso D, Srinivas T, Storch GA, Subramanian AK, Tan JC, Pinsky BA. Impact of Pretransplant Donor BK Viruria in Kidney Transplant Recipients. J Infect Dis. 2019 Jul 2;220(3):370-376. doi: 10.1093/infdis/jiz114. PMID: 30869132; PMCID: PMC6603974.
Ingle H, Lee S, Ai T, Orvedahl A, Rodgers R, Zhao G, Sullender M, Peterson ST, Locke M, Liu TC, Yokoyama CC, Sharp B, Schultz-Cherry S, Miner JJ, Baldridge MT. Viral complementation of immunodeficiency confers protection against enteric pathogens via interferon-λ. Nat Microbiol. 2019 Jul;4(7):1120-1128. doi: 10.1038/s41564-019-0416-7. Epub 2019 Apr 1. PMID: 30936486; PMCID: PMC6588490.
Lawrence D, Baldridge MT, Handley SA. Phages and Human Health: More Than Idle Hitchhikers. Viruses. 2019 Jun 27;11(7):587. doi: 10.3390/v11070587. PMID: 31252683; PMCID: PMC6669647.
Weil GJ, Bogus J, Christian M, Dubray C, Djuardi Y, Fischer PU, Goss CW, Hardy M, Jambulingam P, King CL, Kuttiat VS, Krishnamoorthy K, Laman M, Lemoine JF, O’Brian KK, Robinson LJ, Samuela J, Schechtman KB, Sircar A, Srividya A, Steer AC, Supali T, Subramanian S; DOLF IDA Safety Study Group. The safety of double- and triple-drug community mass drug administration for lymphatic filariasis: A multicenter, open-label, cluster-randomized study. PLoS Med. 2019 Jun 24;16(6):e1002839. doi: 10.1371/journal.pmed.1002839. PMID: 31233507; PMCID: PMC6590784.
Lee S, Liu H, Wilen CB, Sychev ZE, Desai C, Hykes BL Jr, Orchard RC, McCune BT, Kim KW, Nice TJ, Handley SA, Baldridge MT, Amarasinghe GK, Virgin HW. A Secreted Viral Nonstructural Protein Determines Intestinal Norovirus Pathogenesis. Cell Host Microbe. 2019 Jun 12;25(6):845-857.e5. doi: 10.1016/j.chom.2019.04.005. Epub 2019 May 23. PMID: 31130511; PMCID: PMC6622463.
Tyagi R, Elfawal MA, Wildman SA, Helander J, Bulman CA, Sakanari J, Rosa BA, Brindley PJ, Janetka JW, Aroian RV, Mitreva M. Identification of small molecule enzyme inhibitors as broad-spectrum anthelmintics. Sci Rep. 2019 Jun 24;9(1):9085. doi: 10.1038/s41598-019-45548-7. PMID: 31235822; PMCID: PMC6591293.
Xie J, Tarr GAM, Ali S, Chui L, Pang XL, Lee BE, Vanderkooi OG, Tarr PI, Zhuo R, Parsons B, Berenger BM, Kim K, Freedman SB. Pigment Visibility on Rectal Swabs Used To Detect Enteropathogens: a Prospective Cohort Study. J Clin Microbiol. 2019 May 24;57(6):e00213-19. doi: 10.1128/JCM.00213-19. PMID: 30944189; PMCID: PMC6535614.
Kellner T, Parsons B, Chui L, Berenger BM, Xie J, Burnham CA, Tarr PI, Lee BE, Nettel-Aguirre A, Szelewicki J, Vanderkooi OG, Pang XL, Zelyas N, Freedman SB. Comparative Evaluation of Enteric Bacterial Culture and a Molecular Multiplex Syndromic Panel in Children with Acute Gastroenteritis. J Clin Microbiol. 2019 May 24;57(6):e00205-19. doi: 10.1128/JCM.00205-19. PMID: 30971465; PMCID: PMC6535591.
Edi C, Bjerum CM, Ouattara AF, Chhonker YS, Penali LK, Méité A, Koudou BG, Weil GJ, King CL, Murry DJ. Pharmacokinetics, safety, and efficacy of a single co-administered dose of diethylcarbamazine, albendazole and ivermectin in adults with and without Wuchereria bancrofti infection in Côte d’Ivoire. PLoS Negl Trop Dis. 2019 May 20;13(5):e0007325. doi: 10.1371/journal.pntd.0007325. PMID: 31107869; PMCID: PMC6550417.
Martin I, Uh HW, Supali T, Mitreva M, Houwing-Duistermaat JJ. The mixed model for the analysis of a repeated-measurement multivariate count data. Stat Med. 2019 May 30;38(12):2248-2268. doi: 10.1002/sim.8101. Epub 2019 Feb 13. PMID: 30761571; PMCID: PMC6594162.
Schnadower D, Tarr PI, Freedman SB. Lactobacillus for Gastroenteritis in Children. Reply. N Engl J Med. 2019 May 9;380(19):e36. doi: 10.1056/NEJMc1900909. PMID: 31067399.
Chesnais CB, Awaca-Uvon NP, Vlaminck J, Tambwe JP, Weil GJ, Pion SD, Boussinesq M. Risk factors for lymphatic filariasis in two villages of the Democratic Republic of the Congo. Parasit Vectors. 2019 Apr 11;12(1):162. doi: 10.1186/s13071-019-3428-5. PMID: 30971305; PMCID: PMC6458702.
Wu E, Du Y, Gao X, Zhang J, Martin J, Mitreva M, Ratner L. V1 and V2 Domains of HIV Envelope Contribute to CCR5 Antagonist Resistance. J Virol. 2019 Apr 17;93(9):e00050-19. doi: 10.1128/JVI.00050-19. PMID: 30787151; PMCID: PMC6475789.
Schwartz DJ, Elward A, Storch GA, Rosen DA. Ureaplasma urealyticum pyelonephritis presenting with progressive dysuria, renal failure, and neurologic symptoms in an immunocompromised patient. Transpl Infect Dis. 2019 Apr;21(2):e13032. doi: 10.1111/tid.13032. Epub 2018 Dec 10. PMID: 30472777; PMCID: PMC6542459.
Zarlenga DS, Mitreva M, Thompson P, Tyagi R, Tuo W, Hoberg EP. A tale of three kingdoms: members of the Phylum Nematoda independently acquired the detoxifying enzyme cyanase through horizontal gene transfer from plants and bacteria. Parasitology. 2019 Apr;146(4):445-452. doi: 10.1017/S0031182018001701. Epub 2018 Oct 10. PMID: 30301483; PMCID: PMC6422719.
Rao RU, Samarasekera SD, Nagodavithana KC, Punchihewa MW, Ranasinghe USB, Weil GJ. Systematic sampling of adults as a sensitive means of detecting persistence of lymphatic filariasis following mass drug administration in Sri Lanka. PLoS Negl Trop Dis. 2019 Apr 22;13(4):e0007365. doi: 10.1371/journal.pntd.0007365. PMID: 31009482; PMCID: PMC6497314.
Yu J, Peterson DR, Baran AM, Bhattacharya S, Wylie TN, Falsey AR, Mariani TJ, Storch GA. Host Gene Expression in Nose and Blood for the Diagnosis of Viral Respiratory Infection. J Infect Dis. 2019 Apr 1;219(7):1151-1161. doi: 10.1093/infdis/jiy608. PMID: 30339221; PMCID: PMC6420164.
Xie J, Nettel-Aguirre A, Lee BE, Chui L, Pang XL, Zhuo R, Parsons B, Vanderkooi OG, Tarr PI, Ali S, Dickinson JA, Hagen E, Svenson LW, MacDonald SE, Drews SJ, Tellier R, Graham T, Lavoie M, MacDonald J, Freedman SB; Pediatric Emergency Research Canada (PERC) and the Alberta Provincial Pediatric EnTeric Infection TEam (APPETITE Team). Relationship between enteric pathogens and acute gastroenteritis disease severity: a prospective cohort study. Clin Microbiol Infect. 2019 Apr;25(4):454-461. doi: 10.1016/j.cmi.2018.06.016. Epub 2018 Jun 28. PMID: 29964235.
McCoy WH 4th, Otchere E, Rosa BA, Martin J, Mann CM, Mitreva M. Skin Ecology during Sebaceous Drought-How Skin Microbes Respond to Isotretinoin. J Invest Dermatol. 2019 Mar;139(3):732-735. doi: 10.1016/j.jid.2018.09.023. Epub 2018 Oct 24. PMID: 30579608; PMCID: PMC6905187.
Tarr GAM, Lin CY, Lorenzetti D, Chui L, Tarr PI, Hartling L, Vandermeer B, Freedman SB. Performance of commercial tests for molecular detection of Shiga toxin-producing Escherichia coli (STEC): a systematic review and meta- analysis protocol. BMJ Open. 2019 Mar 7;9(3):e025950. doi: 10.1136/bmjopen-2018-025950. PMID: 30850413; PMCID: PMC6430022.
Dharnidharka VR, Ruzinova MB, Chen CC, Parameswaran P, O’Gorman H, Goss CW, Gu H, Storch GA, Wylie K. Metagenomic analysis of DNA viruses from posttransplant lymphoproliferative disorders. Cancer Med. 2019 Mar;8(3):1013-1023. doi: 10.1002/cam4.1985. Epub 2019 Jan 29. PMID: 30697958; PMCID: PMC6434222.
Supali T, Djuardi Y, Lomiga A, Nur Linda S, Iskandar E, Goss CW, Miller JP, Weil GJ, Fischer PU. Comparison of the Impact of Annual and Semiannual Mass Drug Administration on Lymphatic Filariasis Prevalence in Flores Island, Indonesia. Am J Trop Med Hyg. 2019 Feb;100(2):336-343. doi: 10.4269/ajtmh.18-0570. PMID: 30560772; PMCID: PMC6367633.
Bennion BG, Ingle H, Ai TL, Miner CA, Platt DJ, Smith AM, Baldridge MT, Miner JJ. A Human Gain-of-Function STING Mutation Causes Immunodeficiency and Gammaherpesvirus-Induced Pulmonary Fibrosis in Mice. J Virol. 2019 Feb 5;93(4):e01806-18. doi: 10.1128/JVI.01806-18. PMID: 30463976; PMCID: PMC6364005.
Baumann-Dudenhoeffer AM, D’Souza AW, Tarr PI, Warner BB, Dantas G. Infant diet and maternal gestational weight gain predict early metabolic maturation of gut microbiomes. Nat Med. 2018 Dec;24(12):1822-1829. doi: 10.1038/s41591-018-0216-2. Epub 2018 Oct 29. PMID: 30374198; PMCID: PMC6294307.
Tarr GAM, Oltean HN, Phipps AI, Rabinowitz P, Tarr PI. Case definitions of hemolytic uremic syndrome following Escherichia coli O157:H7 infection vary in validity. Int J Med Microbiol. 2018 Dec;308(8):1121-1127. doi: 10.1016/j.ijmm.2018.10.002. Epub 2018 Oct 10. PMID: 30466555; PMCID: PMC6260930.
Anderson NW, Tarr PI. Multiplex Nucleic Acid Amplification Testing to Diagnose Gut Infections: Challenges, Opportunities, and Result Interpretation. Gastroenterol Clin North Am. 2018 Dec;47(4):793-812. doi: 10.1016/j.gtc.2018.07.006. Epub 2018 Sep 29. PMID: 30337033.
MacDuff DA, Baldridge MT, Qaqish AM, Nice TJ, Darbandi AD, Hartley VL, Peterson ST, Miner JJ, Iwai K, Virgin HW. HOIL1 Is Essential for the Induction of Type I and III Interferons by MDA5 and Regulates Persistent Murine Norovirus Infection. J Virol. 2018 Nov 12;92(23):e01368-18. doi: 10.1128/JVI.01368-18. PMID: 30209176; PMCID: PMC6232484.
Schnadower D, Tarr PI, Casper TC, Gorelick MH, Dean JM, O’Connell KJ, Mahajan P, Levine AC, Bhatt SR, Roskind CG, Powell EC, Rogers AJ, Vance C, Sapien RE, Olsen CS, Metheney M, Dickey VP, Hall-Moore C, Freedman SB. Lactobacillus rhamnosus GG versus Placebo for Acute Gastroenteritis in Children. N Engl J Med. 2018 Nov 22;379(21):2002-2014. doi: 10.1056/NEJMoa1802598. PMID: 30462938; PMCID: PMC6358014.
Dunlap MD, Howard N, Das S, Scott N, Ahmed M, Prince O, Rangel-Moreno J, Rosa BA, Martin J, Kaushal D, Kaplan G, Mitreva M, Kim KW, Randolph GJ, Khader SA. A novel role for C-C motif chemokine receptor 2 during infection with hypervirulent Mycobacterium tuberculosis. Mucosal Immunol. 2018 Nov;11(6):1727-1742. doi: 10.1038/s41385-018-0071-y. Epub 2018 Aug 16. PMID: 30115997; PMCID: PMC6279476.
King CL, Suamani J, Sanuku N, Cheng YC, Satofan S, Mancuso B, Goss CW, Robinson LJ, Siba PM, Weil GJ, Kazura JW. A Trial of a Triple-Drug Treatment for Lymphatic Filariasis. N Engl J Med. 2018 Nov 8;379(19):1801-1810. doi: 10.1056/NEJMoa1706854. PMID: 30403937; PMCID: PMC6194477.
Hertz MI, Nana-Djeunga H, Kamgno J, Jelil Njouendou A, Chawa Chunda V, Wanji S, Rush A, Fischer PU, Weil GJ, Budge PJ. Identification and characterization of Loa loa antigens responsible for cross-reactivity with rapid diagnostic tests for lymphatic filariasis. PLoS Negl Trop Dis. 2018 Nov 16;12(11):e0006963. doi: 10.1371/journal.pntd.0006963. PMID: 30444866; PMCID: PMC6267963.
Howard NC, Marin ND, Ahmed M, Rosa BA, Martin J, Bambouskova M, Sergushichev A, Loginicheva E, Kurepina N, Rangel-Moreno J, Chen L, Kreiswirth BN, Klein RS, Balada-Llasat JM, Torrelles JB, Amarasinghe GK, Mitreva M, Artyomov MN, Hsu FF, Mathema B, Khader SA. Mycobacterium tuberculosis carrying a rifampicin drug resistance mutation reprograms macrophage metabolism through cell wall lipid changes. Nat Microbiol. 2018 Oct;3(10):1099-1108. doi: 10.1038/s41564-018-0245-0. Epub 2018 Sep 17. Erratum in: Nat Microbiol. 2018 Nov;3(11):1327. PMID: 30224802; PMCID: PMC6158078.
Wylie KM, Wylie TN, Buller R, Herter B, Cannella MT, Storch GA. Detection of Viruses in Clinical Samples by Use of Metagenomic Sequencing and Targeted Sequence Capture. J Clin Microbiol. 2018 Nov 27;56(12):e01123-18. doi: 10.1128/JCM.01123-18. PMID: 30232133; PMCID: PMC6258860.
Howard NC, Marin ND, Ahmed M, Rosa BA, Martin J, Bambouskova M, Sergushichev A, Loginicheva E, Kurepina N, Rangel-Moreno J, Chen L, Kreiswirth BN, Klein RS, Balada-Llasat JM, Torrelles JB, Amarasinghe GK, Mitreva M, Artyomov MN, Hsu FF, Mathema B, Khader SA. Publisher Correction: Mycobacterium tuberculosis carrying a rifampicin drug resistance mutation reprograms macrophage metabolism through cell wall lipid changes. Nat Microbiol. 2018 Nov;3(11):1327. doi: 10.1038/s41564-018-0281-9. Erratum for: Nat Microbiol. 2018 Oct;3(10):1099-1108. PMID: 30327492.
Leroux LP, Nasr M, Valanparambil R, Tam M, Rosa BA, Siciliani E, Hill DE, Zarlenga DS, Jaramillo M, Weinstock JV, Geary TG, Stevenson MM, Urban JF Jr, Mitreva M, Jardim A. Analysis of the Trichuris suis excretory/secretory proteins as a function of life cycle stage and their immunomodulatory properties. Sci Rep. 2018 Oct 29;8(1):15921. doi: 10.1038/s41598-018-34174-4. PMID: 30374177; PMCID: PMC6206011.
Kennedy EA, King KY, Baldridge MT. Mouse Microbiota Models: Comparing Germ- Free Mice and Antibiotics Treatment as Tools for Modifying Gut Bacteria. Front Physiol. 2018 Oct 31;9:1534. doi: 10.3389/fphys.2018.01534. PMID: 30429801; PMCID: PMC6220354.
Koudou BG, Kouakou MM, Ouattara AF, Yeo S, Brika P, Meite A, Aba E, King CL, Kouakou R, Weil GJ, Fischer PU. Update on the current status of onchocerciasis in Côte d’Ivoire following 40 years of intervention: Progress and challenges. PLoS Negl Trop Dis. 2018 Oct 23;12(10):e0006897. doi: 10.1371/journal.pntd.0006897. PMID: 30352058; PMCID: PMC6214569.
Tarr GAM, Oltean HN, Phipps AI, Rabinowitz P, Tarr PI. Strength of the association between antibiotic use and hemolytic uremic syndrome following Escherichia coli O157:H7 infection varies with case definition. Int J Med Microbiol. 2018 Oct;308(7):921-926. doi: 10.1016/j.ijmm.2018.06.009. Epub 2018 Jun 26. PMID: 30257808; PMCID: PMC6287940.
Stang AS, Trudeau M, Vanderkooi OG, Lee BE, Chui L, Pang XL, Allen V, Burnham CD, Goldfarb DM, MacDonald J, Parsons B, Petrich A, Pollari F, Tarr PI, Tipples G, Zhuo R, Freedman SB. Diagnostic Interpretation Guidance for Pediatric Enteric Pathogens: A Modified Delphi Consensus Process. Can J Infect Dis Med Microbiol. 2018 Sep 27;2018:2589826. doi: 10.1155/2018/2589826. PMID: 30363711; PMCID: PMC6180965.
Rao RU, Samarasekera SD, Nagodavithana KC, Goss CW, Punchihewa MW, Dassanayaka TDM, Ranasinghe USB, Mendis D, Weil GJ. Comprehensive Assessment of a Hotspot with Persistent Bancroftian Filariasis in Coastal Sri Lanka. Am J Trop Med Hyg. 2018 Sep;99(3):735-742. doi: 10.4269/ajtmh.18-0169. Epub 2018 Jul 12. PMID: 30014812; PMCID: PMC6169179.
Sullender ME, Baldridge MT. Norovirus interactions with the commensal microbiota. PLoS Pathog. 2018 Sep 6;14(9):e1007183. doi: 10.1371/journal.ppat.1007183. PMID: 30188944; PMCID: PMC6126856.
Yan H, Baldridge MT, King KY. Hematopoiesis and the bacterial microbiome. Blood. 2018 Aug 9;132(6):559-564. doi: 10.1182/blood-2018-02-832519. Epub 2018 May 31. PMID: 29853538; PMCID: PMC6085989.
McKee RS, Tarr PI, Dietzen DJ, Chawla R, Schnadower D. Clinical and Laboratory Predictors of Shiga Toxin-Producing Escherichia coli Infection in Children With Bloody Diarrhea. J Pediatric Infect Dis Soc. 2018 Aug 17;7(3):e116-e122. doi: 10.1093/jpids/piy025. PMID: 29617871; PMCID: PMC6097574.
Martin I, Djuardi Y, Sartono E, Rosa BA, Supali T, Mitreva M, Houwing- Duistermaat JJ, Yazdanbakhsh M. Dynamic changes in human-gut microbiome in relation to a placebo-controlled anthelminthic trial in Indonesia. PLoS Negl Trop Dis. 2018 Aug 9;12(8):e0006620. doi: 10.1371/journal.pntd.0006620. PMID: 30091979; PMCID: PMC6084808.
Chandrasekaran S, Burnham CD, Warner BB, Tarr PI, Wylie TN. Carriage of Cronobacter sakazakii in the Very Preterm Infant Gut. Clin Infect Dis. 2018 Jul 2;67(2):269-274. doi: 10.1093/cid/ciy062. PMID: 29394356; PMCID: PMC6030953.
Tyagi R, Maddirala AR, Elfawal M, Fischer C, Bulman CA, Rosa BA, Gao X, Chugani R, Zhou M, Helander J, Brindley PJ, Tseng CC, Greig IR, Sakanari J, Wildman SA, Aroian R, Janetka JW, Mitreva M. Small Molecule Inhibitors of Metabolic Enzymes Repurposed as a New Class of Anthelmintics. ACS Infect Dis. 2018 Jul 13;4(7):1130-1145. doi: 10.1021/acsinfecdis.8b00090. Epub 2018 May 14. PMID: 29718656; PMCID: PMC6283408.
Rusconi B, Jiang X, Sidhu R, Ory DS, Warner BB, Tarr PI. Gut Sphingolipid Composition as a Prelude to Necrotizing Enterocolitis. Sci Rep. 2018 Jul 20;8(1):10984. doi: 10.1038/s41598-018-28862-4. PMID: 30030452; PMCID: PMC6054655.
Coverstone AM, Wilson B, Burgdorf D, Schechtman KB, Storch GA, Holtzman MJ, Castro M, Bacharier LB, Sumino K. Recurrent wheezing in children following human metapneumovirus infection. J Allergy Clin Immunol. 2018 Jul;142(1):297-301.e2. doi: 10.1016/j.jaci.2018.02.008. Epub 2018 Mar 2. PMID: 29481834.
Meyers L, Ginocchio CC, Faucett AN, Nolte FS, Gesteland PH, Leber A, Janowiak D, Donovan V, Dien Bard J, Spitzer S, Stellrecht KA, Salimnia H, Selvarangan R, Juretschko S, Daly JA, Wallentine JC, Lindsey K, Moore F, Reed SL, Aguero-Rosenfeld M, Fey PD, Storch GA, Melnick SJ, Robinson CC, Meredith JF, Cook CV, Nelson RK, Jones JD, Scarpino SV, Althouse BM, Ririe KM, Malin BA, Poritz MA. Automated Real-Time Collection of Pathogen-Specific Diagnostic Data: Syndromic Infectious Disease Epidemiology. JMIR Public Health Surveill. 2018 Jul 6;4(3):e59. doi: 10.2196/publichealth.9876. PMID: 29980501; PMCID: PMC6054708.
Budge PJ, Herbert C, Andersen BJ, Weil GJ. Adverse events following single dose treatment of lymphatic filariasis: Observations from a review of the literature. PLoS Negl Trop Dis. 2018 May 16;12(5):e0006454. doi: 10.1371/journal.pntd.0006454. PMID: 29768412; PMCID: PMC5973625.
Wilen CB, Lee S, Hsieh LL, Orchard RC, Desai C, Hykes BL Jr, McAllaster MR, Balce DR, Feehley T, Brestoff JR, Hickey CA, Yokoyama CC, Wang YT, MacDuff DA, Kreamalmayer D, Howitt MR, Neil JA, Cadwell K, Allen PM, Handley SA, van Lookeren Campagne M, Baldridge MT, Virgin HW. Tropism for tuft cells determines immune promotion of norovirus pathogenesis. Science. 2018 Apr 13;360(6385):204-208. doi: 10.1126/science.aar3799. PMID: 29650672; PMCID: PMC6039974.
Yokoyama CC, Baldridge MT, Leung DW, Zhao G, Desai C, Liu TC, Diaz-Ochoa VE, Huynh JP, Kimmey JM, Sennott EL, Hole CR, Idol RA, Park S, Storek KM, Wang C, Hwang S, Viehmann Milam A, Chen E, Kerrinnes T, Starnbach MN, Handley SA, Mysorekar IU, Allen PM, Monack DM, Dinauer MC, Doering TL, Tsolis RM, Dworkin JE, Stallings CL, Amarasinghe GK, Micchelli CA, Virgin HW. LysMD3 is a type II membrane protein without an in vivo role in the response to a range of pathogens. J Biol Chem. 2018 Apr 20;293(16):6022-6038. doi: 10.1074/jbc.RA117.001246. Epub 2018 Mar 1. PMID: 29496999; PMCID: PMC5912457.
International Molecular Helminthology Annotation Network (IMHAN); IMHAN consortium authors include, Palevich N, Britton C, Kamenetzky L, Mitreva M, de Moraes Mourão M, Bennuru S, Quack T, Scholte LLS, Tyagi R, Slatko BE. Tackling Hypotheticals in Helminth Genomes. Trends Parasitol. 2018 Mar;34(3):179-183. doi: 10.1016/j.pt.2017.11.007. Epub 2017 Dec 14. PMID: 29249363.
Magrini V, Gao X, Rosa BA, McGrath S, Zhang X, Hallsworth-Pepin K, Martin J, Hawdon J, Wilson RK, Mitreva M. Improving eukaryotic genome annotation using single molecule mRNA sequencing. BMC Genomics. 2018 Mar 1;19(1):172. doi: 10.1186/s12864-018-4555-7. PMID: 29495964; PMCID: PMC5833154.
Andersen BJ, Kumar J, Curtis K, Sanuku N, Satofan S, King CL, Fischer PU, Weil GJ. Changes in Cytokine, Filarial Antigen, and DNA Levels Associated With Adverse Events Following Treatment of Lymphatic Filariasis. J Infect Dis. 2018 Jan 4;217(2):280-287. doi: 10.1093/infdis/jix578. Erratum in: J Infect Dis. 2018 Mar 28;217(8):1334. PMID: 29149303; PMCID: PMC5853815.
Storch GA. Respiratory Viruses in Babies: Important Insights From Down Under. J Infect Dis. 2018 Jan 17;217(3):350-352. doi: 10.1093/infdis/jix600. Erratum in: J Infect Dis. 2018 Mar 28;217(8):1334. PMID: 29165575; PMCID: PMC7107402.
Rosa BA, Supali T, Gankpala L, Djuardi Y, Sartono E, Zhou Y, Fischer K, Martin J, Tyagi R, Bolay FK, Fischer PU, Yazdanbakhsh M, Mitreva M. Differential human gut microbiome assemblages during soil-transmitted helminth infections in Indonesia and Liberia. Microbiome. 2018 Feb 28;6(1):33. doi: 10.1186/s40168-018-0416-5. PMID: 29486796; PMCID: PMC6389212.
Ingle H, Peterson ST, Baldridge MT. Distinct Effects of Type I and III Interferons on Enteric Viruses. Viruses. 2018 Jan 20;10(1):46. doi: 10.3390/v10010046. PMID: 29361691; PMCID: PMC5795459.
Davila S, Halstead ES, Hall MW, Doctor A, Telford R, Holubkov R, Carcillo JA, Storch GA; Eunice Kennedy Shriver Collaborative Pediatric Critical Care Research Network Investigators. Viral DNAemia and Immune Suppression in Pediatric Sepsis. Pediatr Crit Care Med. 2018 Jan;19(1):e14-e22. doi: 10.1097/PCC.0000000000001376. PMID: 29189638; PMCID: PMC5756109.
Frayman KB, Armstrong DS, Carzino R, Ferkol TW, Grimwood K, Storch GA, Teo SM, Wylie KM, Ranganathan SC. The lower airway microbiota in early cystic fibrosis lung disease: a longitudinal analysis. Thorax. 2017 Dec;72(12):1104-1112. doi: 10.1136/thoraxjnl-2016-209279. Epub 2017 Mar 9. PMID: 28280235.
Denno DM, Tarr PI, Nataro JP. Environmental Enteric Dysfunction: A Case Definition for Intervention Trials. Am J Trop Med Hyg. 2017 Dec;97(6):1643-1646. doi: 10.4269/ajtmh.17-0183. Epub 2017 Sep 21. PMID: 29016294; PMCID: PMC5805039.
Zhong H, Hu X, Janowski AB, Storch GA, Su L, Cao L, Yu J, Xu J. Whole transcriptome profiling reveals major cell types in the cellular immune response against acute and chronic active Epstein-Barr virus infection. Sci Rep. 2017 Dec 19;7(1):17775. doi: 10.1038/s41598-017-18195-z. PMID: 29259291; PMCID: PMC5736708.
Knoop KA, Gustafsson JK, McDonald KG, Kulkarni DH, Coughlin PE, McCrate S, Kim D, Hsieh CS, Hogan SP, Elson CO, Tarr PI, Newberry RD. Microbial antigen encounter during a preweaning interval is critical for tolerance to gut bacteria. Sci Immunol. 2017 Dec 15;2(18):eaao1314. doi: 10.1126/sciimmunol.aao1314. PMID: 29246946; PMCID: PMC5759965.
Yahathugoda C, Weiler MJ, Rao R, De Silva L, Dixon JB, Weerasooriya MV, Weil GJ, Budge PJ. Use of a Novel Portable Three-Dimensional Imaging System to Measure Limb Volume and Circumference in Patients with Filarial Lymphedema. Am J Trop Med Hyg. 2017 Dec;97(6):1836-1842. doi: 10.4269/ajtmh.17-0504. Epub 2017 Oct 5. PMID: 29141750; PMCID: PMC5805069.
Shane AL, Mody RK, Crump JA, Tarr PI, Steiner TS, Kotloff K, Langley JM, Wanke C, Warren CA, Cheng AC, Cantey J, Pickering LK. 2017 Infectious Diseases Society of America Clinical Practice Guidelines for the Diagnosis and Management of Infectious Diarrhea. Clin Infect Dis. 2017 Nov 29;65(12):1963-1973. doi: 10.1093/cid/cix959. PMID: 29194529; PMCID: PMC5848254.
Wylie KM, Stanley KM, TeKippe EM, Mihindukulasuriya K, Storch GA. Resurgence of Rotavirus Genotype G12 in St. Louis During the 2014-2015 Rotavirus Season. J Pediatric Infect Dis Soc. 2017 Nov 24;6(4):346-351. doi: 10.1093/jpids/piw065. PMID: 27988496; PMCID: PMC5907883.
Fotis L, Shaikh N, Baszis KW, Samson CM, Lev-Tzion R, French AR, Tarr PI. Serologic Evidence of Gut-driven Systemic Inflammation in Juvenile Idiopathic Arthritis. J Rheumatol. 2017 Nov;44(11):1624-1631. doi: 10.3899/jrheum.161589. Epub 2017 Sep 15. PMID: 28916545; PMCID: PMC5904838.
Shane AL, Mody RK, Crump JA, Tarr PI, Steiner TS, Kotloff K, Langley JM, Wanke C, Warren CA, Cheng AC, Cantey J, Pickering LK. 2017 Infectious Diseases Society of America Clinical Practice Guidelines for the Diagnosis and Management of Infectious Diarrhea. Clin Infect Dis. 2017 Nov 29;65(12):e45-e80. doi: 10.1093/cid/cix669. PMID: 29053792; PMCID: PMC5850553.
Ammerman E, Sweet SC, Fenchel M, Storch GA, Conrad C, Hayes D Jr, Faro A, Goldfarb S, Melicoff E, Schecter M, Visner G, Williams NM, Danziger-Isakov L. Risk and outcomes of pulmonary fungal infection after pediatric lung transplantation. Clin Transplant. 2017 Nov;31(11):10.1111/ctr.13100. doi: 10.1111/ctr.13100. Epub 2017 Sep 18. PMID: 28871606; PMCID: PMC5724976.
Rao RU, Samarasekera SD, Nagodavithana KC, Dassanayaka TDM, Punchihewa MW, Ranasinghe USB, Weil GJ. Reassessment of areas with persistent Lymphatic Filariasis nine years after cessation of mass drug administration in Sri Lanka. PLoS Negl Trop Dis. 2017 Oct 30;11(10):e0006066. doi: 10.1371/journal.pntd.0006066. PMID: 29084213; PMCID: PMC5679644.
Lee S, Wilen CB, Orvedahl A, McCune BT, Kim KW, Orchard RC, Peterson ST, Nice TJ, Baldridge MT, Virgin HW. Norovirus Cell Tropism Is Determined by Combinatorial Action of a Viral Non-structural Protein and Host Cytokine. Cell Host Microbe. 2017 Oct 11;22(4):449-459.e4. doi: 10.1016/j.chom.2017.08.021. Epub 2017 Sep 28. PMID: 28966054; PMCID: PMC5679710.
Gao X, Tyagi R, Magrini V, Ly A, Jasmer DP, Mitreva M. Compartmentalization of functions and predicted miRNA regulation among contiguous regions of the nematode intestine. RNA Biol. 2017 Oct 3;14(10):1335-1352. doi: 10.1080/15476286.2016.1166333. Epub 2016 Mar 22. PMID: 27002534; PMCID: PMC5711464.
Pittman JE, Wylie KM, Akers K, Storch GA, Hatch J, Quante J, Frayman KB, Clarke N, Davis M, Stick SM, Hall GL, Montgomery G, Ranganathan S, Davis SD, Ferkol TW; Australian Respiratory Early Surveillance Team for Cystic Fibrosis. Association of Antibiotics, Airway Microbiome, and Inflammation in Infants with Cystic Fibrosis. Ann Am Thorac Soc. 2017 Oct;14(10):1548-1555. doi: 10.1513/AnnalsATS.201702-121OC. PMID: 28708417; PMCID: PMC5718571.
Norice-Tra CT, Ribeiro J, Bennuru S, Fay MP, Tyagi R, Mitreva M, Nutman TB. Insights Into Onchocerca volvulus Population Biology Through Multilocus Immunophenotyping. J Infect Dis. 2017 Sep 15;216(6):736-743. doi: 10.1093/infdis/jix394. PMID: 28934436; PMCID: PMC5853885.
Dorshow RB, Hall-Moore C, Shaikh N, Talcott MR, Faubion WA, Rogers TE, Shieh JJ, Debreczeny MP, Johnson JR, Dyer RB, Singh RJ, Tarr PI. Measurement of gut permeability using fluorescent tracer agent technology. Sci Rep. 2017 Sep 7;7(1):10888. doi: 10.1038/s41598-017-09971-y. PMID: 28883476; PMCID: PMC5589723.
Freedman SB, Xie J, Nettel-Aguirre A, Lee B, Chui L, Pang XL, Zhuo R, Parsons B, Dickinson JA, Vanderkooi OG, Ali S, Osterreicher L, Lowerison K, Tarr PI; Alberta Provincial Pediatric EnTeric Infection TEam (APPETITE). Enteropathogen detection in children with diarrhoea, or vomiting, or both, comparing rectal flocked swabs with stool specimens: an outpatient cohort study. Lancet Gastroenterol Hepatol. 2017 Sep;2(9):662-669. doi: 10.1016/S2468-1253(17)30160-7. Epub 2017 Jul 14. PMID: 28712662; PMCID: PMC6235441.
Schnadower D, Tarr PI, Casper TC, Gorelick MH, Dean MJ, O’Connell KJ, Mahajan P, Chun TH, Bhatt SR, Roskind CG, Powell EC, Rogers AJ, Vance C, Sapien RE, Gao F, Freedman SB. Randomised controlled trial of Lactobacillus rhamnosus (LGG) versus placebo in children presenting to the emergency department with acute gastroenteritis: the PECARN probiotic study protocol. BMJ Open. 2017 Sep 24;7(9):e018115. doi: 10.1136/bmjopen-2017-018115. PMID: 28947466; PMCID: PMC5623493.
Dobbs KR, Embury P, Vulule J, Odada PS, Rosa BA, Mitreva M, Kazura JW, Dent AE. Monocyte dysregulation and systemic inflammation during pediatric falciparum malaria. JCI Insight. 2017 Sep 21;2(18):e95352. doi: 10.1172/jci.insight.95352. PMID: 28931756; PMCID: PMC5621919.
Stout MJ, Zhou Y, Wylie KM, Tarr PI, Macones GA, Tuuli MG. Early pregnancy vaginal microbiome trends and preterm birth. Am J Obstet Gynecol. 2017 Sep;217(3):356.e1-356.e18. doi: 10.1016/j.ajog.2017.05.030. Epub 2017 May 23. PMID: 28549981; PMCID: PMC5581228.
Melamed R, Storch GA, Holtz LR, Klein EJ, Herrin B, Tarr PI, Denno DM. Case- Control Assessment of the Roles of Noroviruses, Human Bocaviruses 2, 3, and 4, and Novel Polyomaviruses and Astroviruses in Acute Childhood Diarrhea. J Pediatric Infect Dis Soc. 2017 Sep 1;6(3):e49-e54. doi: 10.1093/jpids/piw083. PMID: 28186546; PMCID: PMC6251662.
Chesnais CB, Awaca-Uvon NP, Bolay FK, Boussinesq M, Fischer PU, Gankpala L, Meite A, Missamou F, Pion SD, Weil GJ. A multi-center field study of two point- of-care tests for circulating Wuchereria bancrofti antigenemia in Africa. PLoS Negl Trop Dis. 2017 Sep 11;11(9):e0005703. doi: 10.1371/journal.pntd.0005703. PMID: 28892473; PMCID: PMC5608416.
Parrish A, Fenchel M, Storch GA, Buller R, Mason S, Williams N, Ikle D, Conrad C, Faro A, Goldfarb S, Hayes D Jr, Melicoff-Portillo E, Schecter M, Visner G, Sweet S, Danziger-Isakov L; Clinical Trials in Organ Transplantation in Children (CTOTC-03). Epstein-Barr viral loads do not predict post-transplant lymphoproliferative disorder in pediatric lung transplant recipients: A multicenter prospective cohort study. Pediatr Transplant. 2017 Sep;21(6):10.1111/petr.13011. doi: 10.1111/petr.13011. Epub 2017 Jun 21. PMID: 28639398; PMCID: PMC5568922.
Amadi B, Besa E, Zyambo K, Kaonga P, Louis-Auguste J, Chandwe K, Tarr PI, Denno DM, Nataro JP, Faubion W, Sailer A, Yeruva S, Brantner T, Murray J, Prendergast AJ, Turner JR, Kelly P. Impaired Barrier Function and Autoantibody Generation in Malnutrition Enteropathy in Zambia. EBioMedicine. 2017 Aug;22:191-199. doi: 10.1016/j.ebiom.2017.07.017. Epub 2017 Jul 19. PMID: 28750860; PMCID: PMC5552244.
Pion SDS, Chesnais CB, Weil GJ, Fischer PU, Missamou F, Boussinesq M. Effect of 3 years of biannual mass drug administration with albendazole on lymphatic filariasis and soil-transmitted helminth infections: a community-based study in Republic of the Congo. Lancet Infect Dis. 2017 Jul;17(7):763-769. doi: 10.1016/S1473-3099(17)30175-5. Epub 2017 Mar 31. PMID: 28372977.
Ahmad FA, Storch GA, Miller AS. Impact of an Institutional Guideline on the Care of Neonates at Risk for Herpes Simplex Virus in the Emergency Department. Pediatr Emerg Care. 2017 Jun;33(6):396-401. doi: 10.1097/PEC.0000000000000498. PMID: 26308608.
Barron LK, Warner BB, Tarr PI, Shannon WD, Deych E, Warner BW. Independence of gut bacterial content and neonatal necrotizing enterocolitis severity. J Pediatr Surg. 2017 Jun;52(6):993-998. doi: 10.1016/j.jpedsurg.2017.03.029. Epub 2017 Apr 5. PMID: 28410788; PMCID: PMC5473614.
Lee S, Baldridge MT. Interferon-Lambda: A Potent Regulator of Intestinal Viral Infections. Front Immunol. 2017 Jun 30;8:749. doi: 10.3389/fimmu.2017.00749. PMID: 28713375; PMCID: PMC5491552.
Tomassini Barbarossa I, Ozdener MH, Melania, Love-Gregory L, Mitreva M, Abumrad NA, Pepino MY. Variant in a common odorant-binding protein gene is associated with bitter sensitivity in people. Behav Brain Res. 2017 Jun 30;329:200-204. doi: 10.1016/j.bbr.2017.05.015. Epub 2017 May 6. PMID: 28487220; PMCID: PMC5534261.
Choi YJ, Bisset SA, Doyle SR, Hallsworth-Pepin K, Martin J, Grant WN, Mitreva M. Genomic introgression mapping of field-derived multiple-anthelmintic resistance in Teladorsagia circumcincta. PLoS Genet. 2017 Jun 23;13(6):e1006857. doi: 10.1371/journal.pgen.1006857. PMID: 28644839; PMCID: PMC5507320.
Bahr NC, Trotman RL, Samman H, Jung RS, Rosterman LR, Weil GJ, Hinthorn DR. Eosinophilic Meningitis Due to Infection With Paragonimus kellicotti. Clin Infect Dis. 2017 May 1;64(9):1271-1274. doi: 10.1093/cid/cix102. PMID: 28158416.
Seifert ME, Gunasekaran M, Horwedel TA, Daloul R, Storch GA, Mohanakumar T, Brennan DC. Polyomavirus Reactivation and Immune Responses to Kidney-Specific Self-Antigens in Transplantation. J Am Soc Nephrol. 2017 Apr;28(4):1314-1325. doi: 10.1681/ASN.2016030285. Epub 2016 Nov 7. PMID: 27821629; PMCID: PMC5373442.
Irvine MA, Stolk WA, Smith ME, Subramanian S, Singh BK, Weil GJ, Michael E, Hollingsworth TD. Effectiveness of a triple-drug regimen for global elimination of lymphatic filariasis: a modelling study. Lancet Infect Dis. 2017 Apr;17(4):451-458. doi: 10.1016/S1473-3099(16)30467-4. Epub 2016 Dec 22. PMID: 28012943.
Rosa BA, McNulty SN, Mitreva M, Jasmer DP. Direct experimental manipulation of intestinal cells in Ascaris suum, with minor influences on the global transcriptome. Int J Parasitol. 2017 Apr;47(5):271-279. doi: 10.1016/j.ijpara.2016.12.005. Epub 2017 Feb 20. PMID: 28223178; PMCID: PMC5423655.
Wylie KM, Wylie TN, Storch GA. Genome Sequence of Enterovirus D68 from St. Louis, Missouri, USA, 2016. Genome Announc. 2017 Mar 2;5(9):e01630-16. doi: 10.1128/genomeA.01630-16. PMID: 28254971; PMCID: PMC5334578.
Baldridge MT, Lee S, Brown JJ, McAllister N, Urbanek K, Dermody TS, Nice TJ, Virgin HW. Expression of Ifnlr1 on Intestinal Epithelial Cells Is Critical to the Antiviral Effects of Interferon Lambda against Norovirus and Reovirus. J Virol. 2017 Mar 13;91(7):e02079-16. doi: 10.1128/JVI.02079-16. PMID: 28077655; PMCID: PMC5355594.
Pammi M, Cope J, Tarr PI, Warner BB, Morrow AL, Mai V, Gregory KE, Kroll JS, McMurtry V, Ferris MJ, Engstrand L, Lilja HE, Hollister EB, Versalovic J, Neu J. Intestinal dysbiosis in preterm infants preceding necrotizing enterocolitis: a systematic review and meta-analysis. Microbiome. 2017 Mar 9;5(1):31. doi: 10.1186/s40168-017-0248-8. PMID: 28274256; PMCID: PMC5343300.
Josefsdottir KS, Baldridge MT, Kadmon CS, King KY. Antibiotics impair murine hematopoiesis by depleting the intestinal microbiota. Blood. 2017 Feb 9;129(6):729-739. doi: 10.1182/blood-2016-03-708594. Epub 2016 Nov 22. PMID: 27879260; PMCID: PMC5301822.
Rashidi A, Vij KR, Buller RS, Wylie KM, Storch GA, DiPersio JF. Tissue polymerase chain reaction for the diagnosis of cytomegalovirus disease after allogeneic hematopoietic cell transplantation. Am J Hematol. 2017 Feb;92(2):E19-E20. doi: 10.1002/ajh.24609. PMID: 27859620.
Ordiz MI, Stephenson K, Agapova S, Wylie KM, Maleta K, Martin J, Trehan I, Tarr PI, Manary MJ. Environmental Enteric Dysfunction and the Fecal Microbiota in Malawian Children. Am J Trop Med Hyg. 2017 Feb 8;96(2):473-476. doi: 10.4269/ajtmh.16-0617. Epub 2016 Dec 12. PMID: 27956653; PMCID: PMC5303055.
Fischer PU, King CL, Jacobson JA, Weil GJ. Potential Value of Triple Drug Therapy with Ivermectin, Diethylcarbamazine, and Albendazole (IDA) to Accelerate Elimination of Lymphatic Filariasis and Onchocerciasis in Africa. PLoS Negl Trop Dis. 2017 Jan 5;11(1):e0005163. doi: 10.1371/journal.pntd.0005163. PMID: 28056015; PMCID: PMC5215784.
Grisaru S, Xie J, Samuel S, Hartling L, Tarr PI, Schnadower D, Freedman SB; Alberta Provincial Pediatric Enteric Infection Team. Associations Between Hydration Status, Intravenous Fluid Administration, and Outcomes of Patients Infected With Shiga Toxin-Producing Escherichia coli: A Systematic Review and Meta-analysis. JAMA Pediatr. 2017 Jan 1;171(1):68-76. doi: 10.1001/jamapediatrics.2016.2952. PMID: 27893870.
Rosa BA, Hallsworth-Pepin K, Martin J, Wollam A, Mitreva M. Genome Sequence of Christensenella minuta DSM 22607T. Genome Announc. 2017 Jan 12;5(2):e01451-16. doi: 10.1128/genomeA.01451-16. PMID: 28082495; PMCID: PMC5256218.
McNulty SN, Tort JF, Rinaldi G, Fischer K, Rosa BA, Smircich P, Fontenla S, Choi YJ, Tyagi R, Hallsworth-Pepin K, Mann VH, Kammili L, Latham PS, Dell’Oca N, Dominguez F, Carmona C, Fischer PU, Brindley PJ, Mitreva M. Genomes of Fasciola hepatica from the Americas Reveal Colonization with Neorickettsia Endobacteria Related to the Agents of Potomac Horse and Human Sennetsu Fevers. PLoS Genet. 2017 Jan 6;13(1):e1006537. doi: 10.1371/journal.pgen.1006537. PMID: 28060841; PMCID: PMC5257007.
Warner BB, Tarr PI. Necrotizing enterocolitis and preterm infant gut bacteria. Semin Fetal Neonatal Med. 2016 Dec;21(6):394-399. doi: 10.1016/j.siny.2016.06.001. Epub 2016 Jun 22. PMID: 27343151; PMCID: PMC5116248.
Baldridge MT, Turula H, Wobus CE. Norovirus Regulation by Host and Microbe. Trends Mol Med. 2016 Dec;22(12):1047-1059. doi: 10.1016/j.molmed.2016.10.003. Epub 2016 Nov 22. PMID: 27887808; PMCID: PMC5135607.
Tarr PI, Warner BB. Gut bacteria and late-onset neonatal bloodstream infections in preterm infants. Semin Fetal Neonatal Med. 2016 Dec;21(6):388-393. doi: 10.1016/j.siny.2016.06.002. Epub 2016 Jun 23. PMID: 27345372.
Torbati ME, Mitreva M, Gopalakrishnan V. Application of Taxonomic Modeling to Microbiota Data Mining for Detection of Helminth Infection in Global Populations. Data (Basel). 2016 Dec;1(3):19. doi: 10.3390/data1030019. Epub 2016 Dec 13. PMID: 28239609; PMCID: PMC5325162.
Choi YJ, Tyagi R, McNulty SN, Rosa BA, Ozersky P, Martin J, Hallsworth-Pepin K, Unnasch TR, Norice CT, Nutman TB, Weil GJ, Fischer PU, Mitreva M. Genomic diversity in Onchocerca volvulus and its Wolbachia endosymbiont. Nat Microbiol. 2016 Nov 21;2:16207. doi: 10.1038/nmicrobiol.2016.207. PMID: 27869792; PMCID: PMC5512550.
Zarlenga D, Wang Z, Mitreva M. Trichinella spiralis: Adaptation and parasitism. Vet Parasitol. 2016 Nov 15;231:8-21. doi: 10.1016/j.vetpar.2016.07.003. Epub 2016 Jul 2. PMID: 27425574; PMCID: PMC5127757.
Giacomin P, Zakrzewski M, Jenkins TP, Su X, Al-Hallaf R, Croese J, de Vries S, Grant A, Mitreva M, Loukas A, Krause L, Cantacessi C. Changes in duodenal tissue-associated microbiota following hookworm infection and consecutive gluten challenges in humans with coeliac disease. Sci Rep. 2016 Nov 9;6:36797. doi: 10.1038/srep36797. PMID: 27827438; PMCID: PMC5101533.
Ordiz MI, Shaikh N, Trehan I, Maleta K, Stauber J, Shulman R, Devaraj S, Tarr PI, Manary MJ. Environmental Enteric Dysfunction Is Associated With Poor Linear Growth and Can Be Identified by Host Fecal mRNAs. J Pediatr Gastroenterol Nutr. 2016 Nov;63(5):453-459. doi: 10.1097/MPG.0000000000001315. PMID: 27347722; PMCID: PMC5084633.
Zhou Y, Bacharier LB, Isaacson-Schmid M, Baty J, Schechtman KB, Sajol G, Wylie K, Storch GA, Castro M, Beigelman A. Azithromycin therapy during respiratory syncytial virus bronchiolitis: Upper airway microbiome alterations and subsequent recurrent wheeze. J Allergy Clin Immunol. 2016 Oct;138(4):1215-1219.e5. doi: 10.1016/j.jaci.2016.03.054. Epub 2016 May 18. PMID: 27339392; PMCID: PMC5056860.
Hang L, Blum AM, Kumar S, Urban JF Jr, Mitreva M, Geary TG, Jardim A, Stevenson MM, Lowell CA, Weinstock JV. Downregulation of the Syk Signaling Pathway in Intestinal Dendritic Cells Is Sufficient To Induce Dendritic Cells That Inhibit Colitis. J Immunol. 2016 Oct 1;197(7):2948-57. doi: 10.4049/jimmunol.1600063. Epub 2016 Aug 24. PMID: 27559049; PMCID: PMC5026942.
Lewis AL, Deitzler GE, Ruiz MJ, Weimer C, Park S, Robinson LS, Hallsworth- Pepin K, Wollam A, Mitreva M, Lewis WG. Genome Sequences of 11 Human Vaginal Actinobacteria Strains. Genome Announc. 2016 Sep 29;4(5):e00887-16. doi: 10.1128/genomeA.00887-16. PMID: 27688328; PMCID: PMC5043546.
Deitzler GE, Ruiz MJ, Weimer C, Park S, Robinson L, Hallsworth-Pepin K, Wollam A, Mitreva M, Lewis AL, Lewis WG. Genome Sequences of 14 Firmicutes Strains Isolated from the Human Vagina. Genome Announc. 2016 Sep 29;4(5):e00888-16. doi: 10.1128/genomeA.00888-16. PMID: 27688329; PMCID: PMC5043547.
Gasparrini AJ, Crofts TS, Gibson MK, Tarr PI, Warner BB, Dantas G. Antibiotic perturbation of the preterm infant gut microbiome and resistome. Gut Microbes. 2016 Sep 2;7(5):443-9. doi: 10.1080/19490976.2016.1218584. Epub 2016 Jul 29. Erratum for: doi: 10.1038/nmicrobiol.2016.24. PMID: 27472377; PMCID: PMC5154371.
Wei J, Damania A, Gao X, Liu Z, Mejia R, Mitreva M, Strych U, Bottazzi ME, Hotez PJ, Zhan B. The hookworm Ancylostoma ceylanicum intestinal transcriptome provides a platform for selecting drug and vaccine candidates. Parasit Vectors. 2016 Sep 27;9(1):518. doi: 10.1186/s13071-016-1795-8. PMID: 27677574; PMCID: PMC5039805.
Li BW, McNulty SN, Rosa BA, Tyagi R, Zeng QR, Gu KZ, Weil GJ, Mitreva M. Conservation and diversification of the transcriptomes of adult Paragonimus westermani and P. skrjabini. Parasit Vectors. 2016 Sep 13;9(1):497. doi: 10.1186/s13071-016-1785-x. PMID: 27619014; PMCID: PMC5020434.
Weimer CM, Deitzler GE, Robinson LS, Park S, Hallsworth-Pepin K, Wollam A, Mitreva M, Lewis WG, Lewis AL. Genome Sequences of 12 Bacterial Isolates Obtained from the Urine of Pregnant Women. Genome Announc. 2016 Sep 29;4(5):e00882-16. doi: 10.1128/genomeA.00882-16. PMID: 27688327; PMCID: PMC5043545.
Deitzler GE, Ruiz MJ, Lu W, Weimer C, Park S, Robinson LS, Hallsworth-Pepin K, Wollam A, Mitreva M, Lewis WG, Lewis AL. Genome Sequences of Nine Gram- Negative Vaginal Bacterial Isolates. Genome Announc. 2016 Sep 29;4(5):e00889-16. doi: 10.1128/genomeA.00889-16. PMID: 27688330; PMCID: PMC5043548.
Orchard RC, Wilen CB, Doench JG, Baldridge MT, McCune BT, Lee YC, Lee S, Pruett-Miller SM, Nelson CA, Fremont DH, Virgin HW. Discovery of a proteinaceous cellular receptor for a norovirus. Science. 2016 Aug 26;353(6302):933-6. doi: 10.1126/science.aaf1220. Epub 2016 Aug 18. PMID: 27540007; PMCID: PMC5484048.
Padhye A, Storch GA. Relationship of human bocavirus 2 to gastroenteritis in children. J Clin Virol. 2016 Jul;80:72-3. doi: 10.1016/j.jcv.2016.03.023. Epub 2016 Mar 31. PMID: 27208921.
Zhang J, Gao X, Martin J, Rosa B, Chen Z, Mitreva M, Henrich T, Kuritzkes D, Ratner L. Evolution of coreceptor utilization to escape CCR5 antagonist therapy. Virology. 2016 Jul;494:198-214. doi: 10.1016/j.virol.2016.04.010. Epub 2016 Apr 26. PMID: 27128349; PMCID: PMC4913893.
Liu TC, Gurram B, Baldridge MT, Head R, Lam V, Luo C, Cao Y, Simpson P, Hayward M, Holtz ML, Bousounis P, Noe J, Lerner D, Cabrera J, Biank V, Stephens M, Huttenhower C, McGovern DP, Xavier RJ, Stappenbeck TS, Salzman NH. Paneth cell defects in Crohn’s disease patients promote dysbiosis. JCI Insight. 2016 Jun 2;1(8):e86907. doi: 10.1172/jci.insight.86907. PMID: 27699268; PMCID: PMC5033844.
Planer JD, Peng Y, Kau AL, Blanton LV, Ndao IM, Tarr PI, Warner BB, Gordon JI. Development of the gut microbiota and mucosal IgA responses in twins and gnotobiotic mice. Nature. 2016 Jun 9;534(7606):263-6. doi: 10.1038/nature17940. Epub 2016 May 25. PMID: 27279225; PMCID: PMC4902178.
Rusconi B, Sanjar F, Koenig SS, Mammel MK, Tarr PI, Eppinger M. Whole Genome Sequencing for Genomics-Guided Investigations of Escherichia coli O157:H7 Outbreaks. Front Microbiol. 2016 Jun 30;7:985. doi: 10.3389/fmicb.2016.00985. PMID: 27446025; PMCID: PMC4928038.
Warner BB, Deych E, Zhou Y, Hall-Moore C, Weinstock GM, Sodergren E, Shaikh N, Hoffmann JA, Linneman LA, Hamvas A, Khanna G, Rouggly-Nickless LC, Ndao IM, Shands BA, Escobedo M, Sullivan JE, Radmacher PG, Shannon WD, Tarr PI. Gut bacteria dysbiosis and necrotising enterocolitis in very low birthweight infants: a prospective case-control study. Lancet. 2016 May 7;387(10031):1928-36. doi: 10.1016/S0140-6736(16)00081-7. Epub 2016 Mar 9. PMID: 26969089; PMCID: PMC5553277.
Rao RU, Samarasekera SD, Nagodavithana KC, Punchihewa MW, Dassanayaka TD, P K D G, Ford E, Ranasinghe US, Henderson RH, Weil GJ. Programmatic Use of Molecular Xenomonitoring at the Level of Evaluation Units to Assess Persistence of Lymphatic Filariasis in Sri Lanka. PLoS Negl Trop Dis. 2016 May 19;10(5):e0004722. doi: 10.1371/journal.pntd.0004722. PMID: 27196431; PMCID: PMC4873130.
Freedman SB, Xie J, Neufeld MS, Hamilton WL, Hartling L, Tarr PI; Alberta Provincial Pediatric Enteric Infection Team (APPETITE), Nettel-Aguirre A, Chuck A, Lee B, Johnson D, Currie G, Talbot J, Jiang J, Dickinson J, Kellner J, MacDonald J, Svenson L, Chui L, Louie M, Lavoie M, Eltorki M, Vanderkooi O, Tellier R, Ali S, Drews S, Graham T, Pang XL. Shiga Toxin-Producing Escherichia coli Infection, Antibiotics, and Risk of Developing Hemolytic Uremic Syndrome: A Meta-analysis. Clin Infect Dis. 2016 May 15;62(10):1251-1258. doi: 10.1093/cid/ciw099. Epub 2016 Feb 24. PMID: 26917812; PMCID: PMC4845788.
Stauber J, Shaikh N, Ordiz MI, Tarr PI, Manary MJ. Droplet digital PCR quantifies host inflammatory transcripts in feces reliably and reproducibly. Cell Immunol. 2016 May;303:43-9. doi: 10.1016/j.cellimm.2016.03.007. Epub 2016 Apr 6. PMID: 27063479; PMCID: PMC4863679.
Wang Q, Heizer E, Rosa BA, Wildman SA, Janetka JW, Mitreva M. Characterization of parasite-specific indels and their proposed relevance for selective anthelminthic drug targeting. Infect Genet Evol. 2016 Apr;39:201-211. doi: 10.1016/j.meegid.2016.01.025. Epub 2016 Jan 30. PMID: 26829384; PMCID: PMC4789095.
Wylie KM, Blanco-Guzman M, Wylie TN, Lawrence SJ, Ghobadi A, DiPersio JF, Storch GA. High-throughput sequencing of cerebrospinal fluid for diagnosis of chronic Propionibacterium acnes meningitis in an allogeneic stem cell transplant recipient. Transpl Infect Dis. 2016 Apr;18(2):227-33. doi: 10.1111/tid.12512. Epub 2016 Mar 31. PMID: 26895706.
Vlaminck J, Supali T, Geldhof P, Hokke CH, Fischer PU, Weil GJ. Community Rates of IgG4 Antibodies to Ascaris Haemoglobin Reflect Changes in Community Egg Loads Following Mass Drug Administration. PLoS Negl Trop Dis. 2016 Mar 18;10(3):e0004532. doi: 10.1371/journal.pntd.0004532. PMID: 26991326; PMCID: PMC4798312.
Abzug MJ, Michaels MG, Wald E, Jacobs RF, Romero JR, Sánchez PJ, Wilson G, Krogstad P, Storch GA, Lawrence R, Shelton M, Palmer A, Robinson J, Dennehy P, Sood SK, Cloud G, Jester P, Acosta EP, Whitley R, Kimberlin D; National Institute of Allergy and Infectious Diseases Collaborative Antiviral Study Group. A Randomized, Double-Blind, Placebo-Controlled Trial of Pleconaril for the Treatment of Neonates With Enterovirus Sepsis. J Pediatric Infect Dis Soc. 2016 Mar;5(1):53-62. doi: 10.1093/jpids/piv015. Epub 2015 Apr 16. PMID: 26407253; PMCID: PMC4765488.
Gibson MK, Wang B, Ahmadi S, Burnham CA, Tarr PI, Warner BB, Dantas G. Developmental dynamics of the preterm infant gut microbiota and antibiotic resistome. Nat Microbiol. 2016 Mar 7;1:16024. doi: 10.1038/nmicrobiol.2016.24. PMID: 27572443; PMCID: PMC5031140.
Monaco CL, Gootenberg DB, Zhao G, Handley SA, Ghebremichael MS, Lim ES, Lankowski A, Baldridge MT, Wilen CB, Flagg M, Norman JM, Keller BC, Luévano JM, Wang D, Boum Y, Martin JN, Hunt PW, Bangsberg DR, Siedner MJ, Kwon DS, Virgin HW. Altered Virome and Bacterial Microbiome in Human Immunodeficiency Virus- Associated Acquired Immunodeficiency Syndrome. Cell Host Microbe. 2016 Mar 9;19(3):311-22. doi: 10.1016/j.chom.2016.02.011. PMID: 26962942; PMCID: PMC4821831.
Simpson KE, Storch GA, Lee CK, Ward KE, Danon S, Simon CM, Delaney JW, Tong A, Canter CE. High Frequency of Detection by PCR of Viral Nucleic Acid in The Blood of Infants Presenting with Clinical Myocarditis. Pediatr Cardiol. 2016 Feb;37(2):399-404. doi: 10.1007/s00246-015-1290-6. Epub 2015 Oct 26. PMID: 26499513; PMCID: PMC4775434.
Thomsen EK, Sanuku N, Baea M, Satofan S, Maki E, Lombore B, Schmidt MS, Siba PM, Weil GJ, Kazura JW, Fleckenstein LL, King CL. Efficacy, Safety, and Pharmacokinetics of Coadministered Diethylcarbamazine, Albendazole, and Ivermectin for Treatment of Bancroftian Filariasis. Clin Infect Dis. 2016 Feb 1;62(3):334-341. doi: 10.1093/cid/civ882. Epub 2015 Oct 20. PMID: 26486704.
McNulty SN, Strübe C, Rosa BA, Martin JC, Tyagi R, Choi YJ, Wang Q, Hallsworth Pepin K, Zhang X, Ozersky P, Wilson RK, Sternberg PW, Gasser RB, Mitreva M. Dictyocaulus viviparus genome, variome and transcriptome elucidate lungworm biology and support future intervention. Sci Rep. 2016 Feb 9;6:20316. doi: 10.1038/srep20316. PMID: 26856411; PMCID: PMC4746573.
Zhou Y, Wylie KM, El Feghaly RE, Mihindukulasuriya KA, Elward A, Haslam DB, Storch GA, Weinstock GM. Metagenomic Approach for Identification of the Pathogens Associated with Diarrhea in Stool Specimens. J Clin Microbiol. 2016 Feb;54(2):368-75. doi: 10.1128/JCM.01965-15. Epub 2015 Dec 4. PMID: 26637379; PMCID: PMC4733167.
Blair D, Nawa Y, Mitreva M, Doanh PN. Gene diversity and genetic variation in lung flukes (genus Paragonimus). Trans R Soc Trop Med Hyg. 2016 Jan;110(1):6-12. doi: 10.1093/trstmh/trv101. PMID: 26740357.
Lu Q, Yokoyama CC, Williams JW, Baldridge MT, Jin X, DesRochers B, Bricker T, Wilen CB, Bagaitkar J, Loginicheva E, Sergushichev A, Kreamalmeyer D, Keller BC, Zhao Y, Kambal A, Green DR, Martinez J, Dinauer MC, Holtzman MJ, Crouch EC, Beatty W, Boon AC, Zhang H, Randolph GJ, Artyomov MN, Virgin HW. Homeostatic Control of Innate Lung Inflammation by Vici Syndrome Gene Epg5 and Additional Autophagy Genes Promotes Influenza Pathogenesis. Cell Host Microbe. 2016 Jan 13;19(1):102-13. doi: 10.1016/j.chom.2015.12.011. PMID: 26764600; PMCID: PMC4714358.
McNulty SN, Rosa BA, Fischer PU, Rumsey JM, Erdmann-Gilmore P, Curtis KC, Specht S, Townsend RR, Weil GJ, Mitreva M. An Integrated Multiomics Approach to Identify Candidate Antigens for Serodiagnosis of Human Onchocerciasis. Mol Cell Proteomics. 2015 Dec;14(12):3224-33. doi: 10.1074/mcp.M115.051953. Epub 2015 Oct 15. PMID: 26472727; PMCID: PMC4762623.
Yu J, Ordiz MI, Stauber J, Shaikh N, Trehan I, Barnell E, Head RD, Maleta K, Tarr PI, Manary MJ. Environmental Enteric Dysfunction Includes a Broad Spectrum of Inflammatory Responses and Epithelial Repair Processes. Cell Mol Gastroenterol Hepatol. 2015 Dec 11;2(2):158-174.e1. doi: 10.1016/j.jcmgh.2015.12.002. PMID: 26973864; PMCID: PMC4769221.
Wylie TN, Wylie KM, Herter BN, Storch GA. Enhanced virome sequencing using targeted sequence capture. Genome Res. 2015 Dec;25(12):1910-20. doi: 10.1101/gr.191049.115. Epub 2015 Sep 22. PMID: 26395152; PMCID: PMC4665012.
Crotty MP, Meyers S, Hampton N, Bledsoe S, Ritchie DJ, Buller RS, Storch GA, Micek ST, Kollef MH. Epidemiology, Co-Infections, and Outcomes of Viral Pneumonia in Adults: An Observational Cohort Study. Medicine (Baltimore). 2015 Dec;94(50):e2332. doi: 10.1097/MD.0000000000002332. PMID: 26683973; PMCID: PMC5058945.
Gurnee EA, Ndao IM, Johnson JR, Johnston BD, Gonzalez MD, Burnham CA, Hall- Moore CM, McGhee JE, Mellmann A, Warner BB, Tarr PI. Gut Colonization of Healthy Children and Their Mothers With Pathogenic Ciprofloxacin-Resistant Escherichia coli. J Infect Dis. 2015 Dec 15;212(12):1862-8. doi: 10.1093/infdis/jiv278. Epub 2015 May 12. PMID: 25969564; PMCID: PMC4655851.
Wylie KM, Weinstock GM, Storch GA. Emergence of Rotavirus G12P[8] in St. Louis During the 2012-2013 Rotavirus Season. J Pediatric Infect Dis Soc. 2015 Dec;4(4):e84-9. doi: 10.1093/jpids/piu090. Epub 2014 Sep 15. PMID: 26513823; PMCID: PMC4681384.
Tyagi R, Joachim A, Ruttkowski B, Rosa BA, Martin JC, Hallsworth-Pepin K, Zhang X, Ozersky P, Wilson RK, Ranganathan S, Sternberg PW, Gasser RB, Mitreva M. Cracking the nodule worm code advances knowledge of parasite biology and biotechnology to tackle major diseases of livestock. Biotechnol Adv. 2015 Nov 1;33(6 Pt 1):980-91. doi: 10.1016/j.biotechadv.2015.05.004. Epub 2015 May 27. PMID: 26026709; PMCID: PMC4746232.
Crotty MP, Meyers S, Hampton N, Bledsoe S, Ritchie DJ, Buller RS, Storch GA, Kollef MH, Micek ST. Impact of antibacterials on subsequent resistance and clinical outcomes in adult patients with viral pneumonia: an opportunity for stewardship. Crit Care. 2015 Nov 18;19:404. doi: 10.1186/s13054-015-1120-5. PMID: 26577540; PMCID: PMC4650137.
Vlaminck J, Fischer PU, Weil GJ. Diagnostic Tools for Onchocerciasis Elimination Programs. Trends Parasitol. 2015 Nov;31(11):571-582. doi: 10.1016/j.pt.2015.06.007. Epub 2015 Oct 11. PMID: 26458784.
Lim ES, Zhou Y, Zhao G, Bauer IK, Droit L, Ndao IM, Warner BB, Tarr PI, Wang D, Holtz LR. Early life dynamics of the human gut virome and bacterial microbiome in infants. Nat Med. 2015 Oct;21(10):1228-34. doi: 10.1038/nm.3950. Epub 2015 Sep 14. PMID: 26366711; PMCID: PMC4710368.
Storch GA. Editorial Commentary: Plethora of Respiratory Viruses and Respiratory Virus Data. Clin Infect Dis. 2015 Oct 15;61(8):1225-7. doi: 10.1093/cid/civ487. Epub 2015 Aug 4. PMID: 26245664; PMCID: PMC7108079.
Julian S, Burnham CA, Sellenriek P, Shannon WD, Hamvas A, Tarr PI, Warner BB. Impact of neonatal intensive care bed configuration on rates of late-onset bacterial sepsis and methicillin-resistant Staphylococcus aureus colonization. Infect Control Hosp Epidemiol. 2015 Oct;36(10):1173-82. doi: 10.1017/ice.2015.144. Epub 2015 Jun 25. PMID: 26108888; PMCID: PMC5089903.
Beigelman A, Bacharier LB, Baty J, Buller R, Mason S, Schechtman KB, Sajol G, Isaacson-Schmid M, Castro M, Storch GA. Does azithromycin modify viral load during severe respiratory syncytial virus bronchiolitis? J Allergy Clin Immunol. 2015 Oct;136(4):1129-31. doi: 10.1016/j.jaci.2015.06.011. Epub 2015 Jul 26. PMID: 26215052; PMCID: PMC4600448.
Muñoz JF, Gauthier GM, Desjardins CA, Gallo JE, Holder J, Sullivan TD, Marty AJ, Carmen JC, Chen Z, Ding L, Gujja S, Magrini V, Misas E, Mitreva M, Priest M, Saif S, Whiston EA, Young S, Zeng Q, Goldman WE, Mardis ER, Taylor JW, McEwen JG, Clay OK, Klein BS, Cuomo CA. The Dynamic Genome and Transcriptome of the Human Fungal Pathogen Blastomyces and Close Relative Emmonsia. PLoS Genet. 2015 Oct 6;11(10):e1005493. doi: 10.1371/journal.pgen.1005493. PMID: 26439490; PMCID: PMC4595289.
Wang Q, Rosa BA, Nare B, Powell K, Valente S, Rotili D, Mai A, Marshall GR, Mitreva M. Targeting Lysine Deacetylases (KDACs) in Parasites. PLoS Negl Trop Dis. 2015 Sep 24;9(9):e0004026. doi: 10.1371/journal.pntd.0004026. PMID: 26402733; PMCID: PMC4581690.
Giacomin P, Zakrzewski M, Croese J, Su X, Sotillo J, McCann L, Navarro S, Mitreva M, Krause L, Loukas A, Cantacessi C. Experimental hookworm infection and escalating gluten challenges are associated with increased microbial richness in celiac subjects. Sci Rep. 2015 Sep 18;5:13797. doi: 10.1038/srep13797. PMID: 26381211; PMCID: PMC4585380.
Chamberland RR, Burnham CA, Storch GA, Jackups R, Doern CD. Prevalence and Seasonal Distribution of Norovirus Detection in Stools Submitted From Pediatric Patients for Enteric Pathogen Testing. J Pediatric Infect Dis Soc. 2015 Sep;4(3):264-6. doi: 10.1093/jpids/piu040. Epub 2014 Jun 2. PMID: 26407431.
Ordiz MI, May TD, Mihindukulasuriya K, Martin J, Crowley J, Tarr PI, Ryan K, Mortimer E, Gopalsamy G, Maleta K, Mitreva M, Young G, Manary MJ. The effect of dietary resistant starch type 2 on the microbiota and markers of gut inflammation in rural Malawi children. Microbiome. 2015 Sep 3;3:37. doi: 10.1186/s40168-015-0102-9. PMID: 26334878; PMCID: PMC4558878.
Wylie TN, Wylie KM, Buller RS, Cannella M, Storch GA. Development and Evaluation of an Enterovirus D68 Real-Time Reverse Transcriptase PCR Assay. J Clin Microbiol. 2015 Aug;53(8):2641-7. doi: 10.1128/JCM.00923-15. Epub 2015 Jun 10. PMID: 26063859; PMCID: PMC4508392.
Davis C, Kota K, Baldhandapani V, Gong W, Abubucker S, Becker E, Martin J, Wylie KM, Khetani R, Hudson ME, Weinstock GM, Mitreva M. mBLAST: Keeping up with the sequencing explosion for (meta)genome analysis. J Data Mining Genomics Proteomics. 2015 Aug;4(3):135. doi: 10.4172/2153-0602.1000135. Epub 2013 Jul 31. PMID: 26500804; PMCID: PMC4612494.
Moore AM, Ahmadi S, Patel S, Gibson MK, Wang B, Ndao IM, Deych E, Shannon W, Tarr PI, Warner BB, Dantas G. Erratum: Gut resistome development in healthy twin pairs in the first year of life. Microbiome. 2015 Jul 23;3:29. doi: 10.1186/s40168-015-0095-4. Erratum for: Microbiome. 2015;3:27. PMID: 26207183; PMCID: PMC4511998.
Yahathugoda TC, Supali T, Rao RU, Djuardi Y, Stefani D, Pical F, Fischer PU, Lloyd MM, Premaratne PH, Weerasooriya MV, Weil GJ. A comparison of two tests for filarial antigenemia in areas in Sri Lanka and Indonesia with low-level persistence of lymphatic filariasis following mass drug administration. Parasit Vectors. 2015 Jul 15;8:369. doi: 10.1186/s13071-015-0979-y. PMID: 26168919; PMCID: PMC4501213.
Qin X, Klein EJ, Galanakis E, Thomas AA, Stapp JR, Rich S, Buccat AM, Tarr PI. Real-Time PCR Assay for Detection and Differentiation of Shiga Toxin- Producing Escherichia coli from Clinical Samples. J Clin Microbiol. 2015 Jul;53(7):2148-53. doi: 10.1128/JCM.00115-15. Epub 2015 Apr 29. PMID: 25926491; PMCID: PMC4473226.
Wang Q, Rosa BA, Jasmer DP, Mitreva M. Pan-Nematoda Transcriptomic Elucidation of Essential Intestinal Functions and Therapeutic Targets With Broad Potential. EBioMedicine. 2015 Jul 29;2(9):1079-89. doi: 10.1016/j.ebiom.2015.07.030. PMID: 26501106; PMCID: PMC4587998.
VanDussen KL, Marinshaw JM, Shaikh N, Miyoshi H, Moon C, Tarr PI, Ciorba MA, Stappenbeck TS. Development of an enhanced human gastrointestinal epithelial culture system to facilitate patient-based assays. Gut. 2015 Jun;64(6):911-20. doi: 10.1136/gutjnl-2013-306651. Epub 2014 Jul 9. PMID: 25007816; PMCID: PMC4305344.
Li BW, Rush AC, Weil GJ. Expression of five acetylcholine receptor subunit genes in Brugia malayi adult worms. Int J Parasitol Drugs Drug Resist. 2015 Jun 23;5(3):100-9. doi: 10.1016/j.ijpddr.2015.04.003. PMID: 26199859; PMCID: PMC4506985.
Zhang Y, Rowehl L, Krumsiek JM, Orner EP, Shaikh N, Tarr PI, Sodergren E, Weinstock GM, Boedeker EC, Xiong X, Parkinson J, Frank DN, Li E, Gathungu G. Identification of Candidate Adherent-Invasive E. coli Signature Transcripts by Genomic/Transcriptomic Analysis. PLoS One. 2015 Jun 30;10(6):e0130902. doi: 10.1371/journal.pone.0130902. Erratum in: PLoS One. 2015;10(7):e0134759. PMID: 26125937; PMCID: PMC4509574.
Nobel YR, Cox LM, Kirigin FF, Bokulich NA, Yamanishi S, Teitler I, Chung J, Sohn J, Barber CM, Goldfarb DS, Raju K, Abubucker S, Zhou Y, Ruiz VE, Li H, Mitreva M, Alekseyenko AV, Weinstock GM, Sodergren E, Blaser MJ. Metabolic and metagenomic outcomes from early-life pulsed antibiotic treatment. Nat Commun. 2015 Jun 30;6:7486. doi: 10.1038/ncomms8486. PMID: 26123276; PMCID: PMC4491183.
Moore AM, Ahmadi S, Patel S, Gibson MK, Wang B, Ndao MI, Deych E, Shannon W, Tarr PI, Warner BB, Dantas G. Gut resistome development in healthy twin pairs in the first year of life. Microbiome. 2015 Jun 25;3:27. doi: 10.1186/s40168-015-0090-9. Erratum in: Microbiome. 2015;3:29. PMID: 26113976; PMCID: PMC4480905.
Lloyd MM, Gilbert R, Taha NT, Weil GJ, Meite A, Kouakou IM, Fischer PU. Conventional parasitology and DNA-based diagnostic methods for onchocerciasis elimination programmes. Acta Trop. 2015 Jun;146:114-8. doi: 10.1016/j.actatropica.2015.03.019. Epub 2015 Mar 25. PMID: 25818324.
Fischer PU, Weil GJ. North American paragonimiasis: epidemiology and diagnostic strategies. Expert Rev Anti Infect Ther. 2015 Jun;13(6):779-86. doi: 10.1586/14787210.2015.1031745. Epub 2015 Apr 3. PMID: 25835312.
Moon C, Baldridge MT, Wallace MA, D CA, Burnham, Virgin HW, Stappenbeck TS. Vertically transmitted faecal IgA levels determine extra-chromosomal phenotypic variation. Nature. 2015 May 7;521(7550):90-93. doi: 10.1038/nature14139. Epub 2015 Feb 16. PMID: 25686606; PMCID: PMC4425643.
Tyagi R, Rosa BA, Lewis WG, Mitreva M. Pan-phylum Comparison of Nematode Metabolic Potential. PLoS Negl Trop Dis. 2015 May 22;9(5):e0003788. doi: 10.1371/journal.pntd.0003788. PMID: 26000881; PMCID: PMC4441503.
Pion SD, Chesnais CB, Bopda J, Louya F, Fischer PU, Majewski AC, Weil GJ, Boussinesq M, Missamou F. The impact of two semiannual treatments with albendazole alone on lymphatic filariasis and soil-transmitted helminth infections: a community-based study in the Republic of Congo. Am J Trop Med Hyg. 2015 May;92(5):959-66. doi: 10.4269/ajtmh.14-0661. Epub 2015 Mar 9. PMID: 25758650; PMCID: PMC4426585.
Rosa BA, Townsend R, Jasmer DP, Mitreva M. Functional and phylogenetic characterization of proteins detected in various nematode intestinal compartments. Mol Cell Proteomics. 2015 Apr;14(4):812-27. doi: 10.1074/mcp.M114.046227. Epub 2015 Jan 21. PMID: 25609831; PMCID: PMC4390262.
Kuczius T, Zhang W, Merkel V, Mellmann A, Tarr PI, Karch H. Agitation down- regulates immunoglobulin binding protein EibG expression in Shiga toxin- producing Escherichia coli (STEC). PLoS One. 2015 Mar 6;10(3):e0119583. doi: 10.1371/journal.pone.0119583. PMID: 25746924; PMCID: PMC4352079.
Shi B, Chang M, Martin J, Mitreva M, Lux R, Klokkevold P, Sodergren E, Weinstock GM, Haake SK, Li H. Dynamic changes in the subgingival microbiome and their potential for diagnosis and prognosis of periodontitis. mBio. 2015 Feb 17;6(1):e01926-14. doi: 10.1128/mBio.01926-14. PMID: 25691586; PMCID: PMC4337560.
Norman JM, Handley SA, Baldridge MT, Droit L, Liu CY, Keller BC, Kambal A, Monaco CL, Zhao G, Fleshner P, Stappenbeck TS, McGovern DP, Keshavarzian A, Mutlu EA, Sauk J, Gevers D, Xavier RJ, Wang D, Parkes M, Virgin HW. Disease- specific alterations in the enteric virome in inflammatory bowel disease. Cell. 2015 Jan 29;160(3):447-60. doi: 10.1016/j.cell.2015.01.002. Epub 2015 Jan 22. PMID: 25619688; PMCID: PMC4312520.
Nice TJ, Baldridge MT, McCune BT, Norman JM, Lazear HM, Artyomov M, Diamond MS, Virgin HW. Interferon-λ cures persistent murine norovirus infection in the absence of adaptive immunity. Science. 2015 Jan 16;347(6219):269-73. doi: 10.1126/science.1258100. Epub 2014 Nov 27. PMID: 25431489; PMCID: PMC4398891.
Martin J, Rosa BA, Ozersky P, Hallsworth-Pepin K, Zhang X, Bhonagiri- Palsikar V, Tyagi R, Wang Q, Choi YJ, Gao X, McNulty SN, Brindley PJ, Mitreva M. Helminth.net: expansions to Nematode.net and an introduction to Trematode.net. Nucleic Acids Res. 2015 Jan;43(Database issue):D698-706. doi: 10.1093/nar/gku1128. Epub 2014 Nov 11. PMID: 25392426; PMCID: PMC4383941.
Jasmer DP, Rosa BA, Mitreva M. Peptidases compartmentalized to the Ascaris suum intestinal lumen and apical intestinal membrane. PLoS Negl Trop Dis. 2015 Jan 8;9(1):e3375. doi: 10.1371/journal.pntd.0003375. PMID: 25569475; PMCID: PMC4287503.
Sommovilla J, Zhou Y, Sun RC, Choi PM, Diaz-Miron J, Shaikh N, Sodergren E, Warner BB, Weinstock GM, Tarr PI, Warner BW. Small bowel resection induces long- term changes in the enteric microbiota of mice. J Gastrointest Surg. 2015 Jan;19(1):56-64; discussion 64. doi: 10.1007/s11605-014-2631-0. Epub 2014 Sep 3. PMID: 25183407; PMCID: PMC4576885.
Baldridge MT, Nice TJ, McCune BT, Yokoyama CC, Kambal A, Wheadon M, Diamond MS, Ivanova Y, Artyomov M, Virgin HW. Commensal microbes and interferon-λ determine persistence of enteric murine norovirus infection. Science. 2015 Jan 16;347(6219):266-9. doi: 10.1126/science.1258025. Epub 2014 Nov 27. PMID: 25431490; PMCID: PMC4409937.
Rao RU, Nagodavithana KC, Samarasekera SD, Wijegunawardana AD, Premakumara WD, Perera SN, Settinayake S, Miller JP, Weil GJ. A comprehensive assessment of lymphatic filariasis in Sri Lanka six years after cessation of mass drug administration. PLoS Negl Trop Dis. 2014 Nov 13;8(11):e3281. doi: 10.1371/journal.pntd.0003281. Erratum in: PLoS Negl Trop Dis. 2014 Dec;(12):e3428. PMID: 25393404; PMCID: PMC4230885.
La Rosa PS, Warner BB, Zhou Y, Weinstock GM, Sodergren E, Hall-Moore CM, Stevens HJ, Bennett WE Jr, Shaikh N, Linneman LA, Hoffmann JA, Hamvas A, Deych E, Shands BA, Shannon WD, Tarr PI. Patterned progression of bacterial populations in the premature infant gut. Proc Natl Acad Sci U S A. 2014 Aug 26;111(34):12522-7. doi: 10.1073/pnas.1409497111. Epub 2014 Aug 11. Erratum in: Proc Natl Acad Sci U S A. 2014 Dec 2;111(48):17336. PMID: 25114261; PMCID: PMC4151715.
Zhou Y, Burnham CA, Hink T, Chen L, Shaikh N, Wollam A, Sodergren E, Weinstock GM, Tarr PI, Dubberke ER. Phenotypic and genotypic analysis of Clostridium difficile isolates: a single-center study. J Clin Microbiol. 2014 Dec;52(12):4260-6. doi: 10.1128/JCM.02115-14. Epub 2014 Oct 1. PMID: 25275005; PMCID: PMC4313296.
Denno DM, VanBuskirk K, Nelson ZC, Musser CA, Hay Burgess DC, Tarr PI. Use of the lactulose to mannitol ratio to evaluate childhood environmental enteric dysfunction: a systematic review. Clin Infect Dis. 2014 Nov 1;59 Suppl 4:S213-9. doi: 10.1093/cid/ciu541. PMID: 25305289.
Keusch GT, Denno DM, Black RE, Duggan C, Guerrant RL, Lavery JV, Nataro JP, Rosenberg IH, Ryan ET, Tarr PI, Ward H, Bhutta ZA, Coovadia H, Lima A, Ramakrishna B, Zaidi AK, Hay Burgess DC, Brewer T. Environmental enteric dysfunction: pathogenesis, diagnosis, and clinical consequences. Clin Infect Dis. 2014 Nov 1;59 Suppl 4(Suppl 4):S207-12. doi: 10.1093/cid/ciu485. PMID: 25305288; PMCID: PMC4481570.
Cantacessi C, Giacomin P, Croese J, Zakrzewski M, Sotillo J, McCann L, Nolan MJ, Mitreva M, Krause L, Loukas A. Impact of experimental hookworm infection on the human gut microbiota. J Infect Dis. 2014 Nov 1;210(9):1431-4. doi: 10.1093/infdis/jiu256. Epub 2014 May 3. PMID: 24795483; PMCID: PMC4195438.
Ondrovics M, Silbermayr K, Mitreva M, Young ND, Gasser RB, Joachim A. Proteomics elucidates key molecules involved in exsheathment in vitro in Oesophagostomum dentatum. Int J Parasitol. 2014 Oct 1;44(11):759-64. doi: 10.1016/j.ijpara.2014.06.003. Epub 2014 Jul 15. PMID: 25036992; PMCID: PMC4249666.
Sotillo J, Sanchez-Flores A, Cantacessi C, Harcus Y, Pickering D, Bouchery T, Camberis M, Tang SC, Giacomin P, Mulvenna J, Mitreva M, Berriman M, LeGros G, Maizels RM, Loukas A. Secreted proteomes of different developmental stages of the gastrointestinal nematode Nippostrongylus brasiliensis. Mol Cell Proteomics. 2014 Oct;13(10):2736-51. doi: 10.1074/mcp.M114.038950. Epub 2014 Jul 3. PMID: 24994561; PMCID: PMC4188999.
Schindler EI, Sellenriek P, Storch GA, Tarr PI, Burnham CA. Shiga toxin- producing Escherichia coli: a single-center, 11-year pediatric experience. J Clin Microbiol. 2014 Oct;52(10):3647-53. doi: 10.1128/JCM.01231-14. Epub 2014 Jul 30. PMID: 25078916; PMCID: PMC4187762.
McNulty SN, Fischer PU, Townsend RR, Curtis KC, Weil GJ, Mitreva M. Systems biology studies of adult paragonimus lung flukes facilitate the identification of immunodominant parasite antigens. PLoS Negl Trop Dis. 2014 Oct 16;8(10):e3242. doi: 10.1371/journal.pntd.0003242. PMID: 25329661; PMCID: PMC4199545.
Donia MS, Cimermancic P, Schulze CJ, Wieland Brown LC, Martin J, Mitreva M, Clardy J, Linington RG, Fischbach MA. A systematic analysis of biosynthetic gene clusters in the human microbiome reveals a common family of antibiotics. Cell. 2014 Sep 11;158(6):1402-1414. doi: 10.1016/j.cell.2014.08.032. PMID: 25215495; PMCID: PMC4164201.
Al-Zubeidi D, Thangarajh M, Pathak S, Cai C, Schlaggar BL, Storch GA, Grange DK, Watson ME Jr. Fatal human herpesvirus 6-associated encephalitis in two boys with underlying POLG mitochondrial disorders. Pediatr Neurol. 2014 Sep;51(3):448-52. doi: 10.1016/j.pediatrneurol.2014.04.006. Epub 2014 Apr 13. PMID: 25160553.
Davis TK, Van De Kar NCAJ, Tarr PI. Shiga Toxin/Verocytotoxin-Producing Escherichia coli Infections: Practical Clinical Perspectives. Microbiol Spectr. 2014 Aug;2(4):EHEC-0025-2014. doi: 10.1128/microbiolspec.EHEC-0025-2014. PMID: 26104210.
Holtz LR, Tarr PI. Unexplained benefits of antibiotics in childhood: empiricism in need of enlightenment. J Infect Dis. 2014 Aug 15;210(4):514-6. doi: 10.1093/infdis/jiu172. Epub 2014 Mar 20. PMID: 24652497.
Lee J, Storch GA. Characterization of human coronavirus OC43 and human coronavirus NL63 infections among hospitalized children <5 years of age. Pediatr Infect Dis J. 2014 Aug;33(8):814-20. doi: 10.1097/INF.0000000000000292. PMID: 24577040.
Walton AH, Muenzer JT, Rasche D, Boomer JS, Sato B, Brownstein BH, Pachot A, Brooks TL, Deych E, Shannon WD, Green JM, Storch GA, Hotchkiss RS. Reactivation of multiple viruses in patients with sepsis. PLoS One. 2014 Jun 11;9(2):e98819. doi: 10.1371/journal.pone.0098819. PMID: 24919177; PMCID: PMC4053360.
Kraal L, Abubucker S, Kota K, Fischbach MA, Mitreva M. The prevalence of species and strains in the human microbiome: a resource for experimental efforts. PLoS One. 2014 May 14;9(5):e97279. doi: 10.1371/journal.pone.0097279. PMID: 24827833; PMCID: PMC4020798.
Carl MA, Ndao IM, Springman AC, Manning SD, Johnson JR, Johnston BD, Burnham CA, Weinstock ES, Weinstock GM, Wylie TN, Mitreva M, Abubucker S, Zhou Y, Stevens HJ, Hall-Moore C, Julian S, Shaikh N, Warner BB, Tarr PI. Sepsis from the gut: the enteric habitat of bacteria that cause late-onset neonatal bloodstream infections. Clin Infect Dis. 2014 May;58(9):1211-8. doi: 10.1093/cid/ciu084. Epub 2014 Mar 18. PMID: 24647013; PMCID: PMC3982840.
Gunawardena S, Gunawardena NK, Kahathuduwa G, Karunaweera ND, de Silva NR, Ranasinghe UB, Samarasekara SD, Nagodavithana KC, Rao RU, Rebollo MP, Weil GJ. Integrated school-based surveillance for soil-transmitted helminth infections and lymphatic filariasis in Gampaha district, Sri Lanka. Am J Trop Med Hyg. 2014 Apr;90(4):661-6. doi: 10.4269/ajtmh.13-0641. Epub 2014 Feb 3. PMID: 24493672; PMCID: PMC3973510.
Abubucker S, McNulty SN, Rosa BA, Mitreva M. Identification and characterization of alternative splicing in parasitic nematode transcriptomes. Parasit Vectors. 2014 Apr 1;7:151. doi: 10.1186/1756-3305-7-151. PMID: 24690220; PMCID: PMC3997825.
Mangiola S, Young ND, Sternberg PW, Strube C, Korhonen PK, Mitreva M, Scheerlinck JP, Hofmann A, Jex AR, Gasser RB. Analysis of the transcriptome of adult Dictyocaulus filaria and comparison with Dictyocaulus viviparus, with a focus on molecules involved in host-parasite interactions. Int J Parasitol. 2014 Mar;44(3-4):251-61. doi: 10.1016/j.ijpara.2013.12.003. Epub 2014 Jan 31. PMID: 24487001; PMCID: PMC4040346.
Tang YT, Gao X, Rosa BA, Abubucker S, Hallsworth-Pepin K, Martin J, Tyagi R, Heizer E, Zhang X, Bhonagiri-Palsikar V, Minx P, Warren WC, Wang Q, Zhan B, Hotez PJ, Sternberg PW, Dougall A, Gaze ST, Mulvenna J, Sotillo J, Ranganathan S, Rabelo EM, Wilson RW, Felgner PL, Bethony J, Hawdon JM, Gasser RB, Loukas A, Mitreva M. Genome of the human hookworm Necator americanus. Nat Genet. 2014 Mar;46(3):261-269. doi: 10.1038/ng.2875. Epub 2014 Jan 19. PMID: 24441737; PMCID: PMC3978129.
Rosa BA, Jasmer DP, Mitreva M. Genome-wide tissue-specific gene expression, co-expression and regulation of co-expressed genes in adult nematode Ascaris suum. PLoS Negl Trop Dis. 2014 Feb 6;8(2):e2678. doi: 10.1371/journal.pntd.0002678. PMID: 24516681; PMCID: PMC3916258.
Fischer K, Beatty WL, Weil GJ, Fischer PU. High pressure freezing/freeze substitution fixation improves the ultrastructural assessment of Wolbachia endosymbiont-filarial nematode host interaction. PLoS One. 2014 Jan 17;9(1):e86383. doi: 10.1371/journal.pone.0086383. PMID: 24466066; PMCID: PMC3895037.
Li BW, Rush AC, Weil GJ. High level expression of a glutamate-gated chloride channel gene in reproductive tissues of Brugia malayi may explain the sterilizing effect of ivermectin on filarial worms. Int J Parasitol Drugs Drug Resist. 2014 Jan 31;4(2):71-6. doi: 10.1016/j.ijpddr.2014.01.002. PMID: 25057456; PMCID: PMC4095040.
El Feghaly RE, Stauber JL, Tarr PI, Haslam DB. Viral co-infections are common and are associated with higher bacterial burden in children with clostridium difficile infection. J Pediatr Gastroenterol Nutr. 2013 Dec;57(6):813-6. doi: 10.1097/MPG.0b013e3182a3202f. PMID: 23838821; PMCID: PMC4098970.
El Feghaly RE, Stauber JL, Tarr PI, Haslam DB. Intestinal inflammatory biomarkers and outcome in pediatric Clostridium difficile infections. J Pediatr. 2013 Dec;163(6):1697-1704.e2. doi: 10.1016/j.jpeds.2013.07.029. Epub 2013 Sep 4. PMID: 24011765; PMCID: PMC4098967.
Krentel A, Fischer PU, Weil GJ. A review of factors that influence individual compliance with mass drug administration for elimination of lymphatic filariasis. PLoS Negl Trop Dis. 2013 Nov 21;7(11):e2447. doi: 10.1371/journal.pntd.0002447. PMID: 24278486; PMCID: PMC3836848.
Chesnais CB, Missamou F, Pion SD, Bopda J, Louya F, Majewski AC, Weil GJ, Boussinesq M. Semi-quantitative scoring of an immunochromatographic test for circulating filarial antigen. Am J Trop Med Hyg. 2013 Nov;89(5):916-8. doi: 10.4269/ajtmh.13-0245. Epub 2013 Sep 9. PMID: 24019435; PMCID: PMC3820335.
Moore AM, Patel S, Forsberg KJ, Wang B, Bentley G, Razia Y, Qin X, Tarr PI, Dantas G. Pediatric fecal microbiota harbor diverse and novel antibiotic resistance genes. PLoS One. 2013 Nov 13;8(11):e78822. doi: 10.1371/journal.pone.0078822. PMID: 24236055; PMCID: PMC3827270.
Henry TS, Lane MA, Weil GJ, Bailey TC, Bhalla S. Chest CT features of North American paragonimiasis. AJR Am J Roentgenol. 2012 May;198(5):1076-83. doi: 10.2214/AJR.11.7530. Erratum in: AJR Am J Roentgenol. 2013 Nov;201(5):1165. PMID: 22528896; PMCID: PMC3832351.
Gurnee EA, Ndao IM, McGhee JE, Warner BB, Tarr PI, Fritz SA, Burnham CA. Fecal carriage of methicillin-resistant Staphylococcus aureus and vancomycin- resistant Enterococcus in healthy children. Antimicrob Agents Chemother. 2014;58(2):1261-2. doi: 10.1128/AAC.02466-13. Epub 2013 Nov 25. PMID: 24277049; PMCID: PMC3910844.
Wendl MC, Kota K, Weinstock GM, Mitreva M. Coverage theories for metagenomic DNA sequencing based on a generalization of Stevens’ theorem. J Math Biol. 2013 Nov;67(5):1141-61. doi: 10.1007/s00285-012-0586-x. Epub 2012 Sep 11. PMID: 22965653; PMCID: PMC3795925.
Schnadower D, Tarr PI, Gorelick MH, O’Connell K, Roskind CG, Powell EC, Rao J, Bhatt S, Freedman SB. Validation of the modified Vesikari score in children with gastroenteritis in 5 US emergency departments. J Pediatr Gastroenterol Nutr. 2013 Oct;57(4):514-9. doi: 10.1097/MPG.0b013e31829ae5a3. PMID: 23676445; PMCID: PMC3788842.
Davis TK, McKee R, Schnadower D, Tarr PI. Treatment of Shiga toxin-producing Escherichia coli infections. Infect Dis Clin North Am. 2013 Sep;27(3):577-97. doi: 10.1016/j.idc.2013.05.010. Epub 2013 Jul 24. PMID: 24011831.
Wylie KM, Weinstock GM, Storch GA. Virome genomics: a tool for defining the human virome. Curr Opin Microbiol. 2013 Aug;16(4):479-84. doi: 10.1016/j.mib.2013.04.006. Epub 2013 May 23. PMID: 23706900; PMCID: PMC3755052.
Taylor CM, Wang Q, Rosa BA, Huang SC, Powell K, Schedl T, Pearce EJ, Abubucker S, Mitreva M. Discovery of anthelmintic drug targets and drugs using chokepoints in nematode metabolic pathways. PLoS Pathog. 2013;9(8):e1003505. doi: 10.1371/journal.ppat.1003505. Epub 2013 Aug 1. PMID: 23935495; PMCID: PMC3731235.
Hu X, Yu J, Crosby SD, Storch GA. Gene expression profiles in febrile children with defined viral and bacterial infection. Proc Natl Acad Sci U S A. 2013 Jul 30;110(31):12792-7. doi: 10.1073/pnas.1302968110. Epub 2013 Jul 15. PMID: 23858444; PMCID: PMC3732941.
El Feghaly RE, Stauber JL, Deych E, Gonzalez C, Tarr PI, Haslam DB. Markers of intestinal inflammation, not bacterial burden, correlate with clinical outcomes in Clostridium difficile infection. Clin Infect Dis. 2013 Jun;56(12):1713-21. doi: 10.1093/cid/cit147. Epub 2013 Mar 13. PMID: 23487367; PMCID: PMC3707425.
Fischer PU, Curtis KC, Folk SM, Wilkins PP, Marcos LA, Weil GJ. Serological diagnosis of North American Paragonimiasis by Western blot using Paragonimus kellicotti adult worm antigen. Am J Trop Med Hyg. 2013 Jun;88(6):1035-40. doi: 10.4269/ajtmh.12-0720. Epub 2013 Apr 15. PMID: 23589531; PMCID: PMC3752799.
Wang Z, Gao X, Martin J, Yin Y, Abubucker S, Rash AC, Li BW, Nash B, Hallsworth-Pepin K, Jasmer DP, Mitreva M. Gene expression analysis distinguishes tissue-specific and gender-related functions among adult Ascaris suum tissues. Mol Genet Genomics. 2013 Jun;288(5-6):243-60. doi: 10.1007/s00438-013-0743-y. Epub 2013 Apr 10. PMID: 23572074; PMCID: PMC3670759.
McNulty SN, Mitreva M, Weil GJ, Fischer PU. Inter and intra-specific diversity of parasites that cause lymphatic filariasis. Infect Genet Evol. 2013 Mar;14:137-46. doi: 10.1016/j.meegid.2012.11.002. Epub 2012 Nov 29. PMID: 23201850; PMCID: PMC3801268.
Taylor CM, Martin J, Rao RU, Powell K, Abubucker S, Mitreva M. Using existing drugs as leads for broad spectrum anthelmintics targeting protein kinases. PLoS Pathog. 2013 Feb;9(2):e1003149. doi: 10.1371/journal.ppat.1003149. Epub 2013 Feb 14. PMID: 23459584; PMCID: PMC3573124.
Heizer E, Zarlenga DS, Rosa B, Gao X, Gasser RB, De Graef J, Geldhof P, Mitreva M. Transcriptome analyses reveal protein and domain families that delineate stage-related development in the economically important parasitic nematodes, Ostertagia ostertagi and Cooperia oncophora. BMC Genomics. 2013 Feb 22;14:118. doi: 10.1186/1471-2164-14-118. PMID: 23432754; PMCID: PMC3599158.
Agapova S, Stephenson K, Manary M, Weisz A, Tarr PI, Mkakosya R, Maleta K, Shulman RJ, Manary M, Shaikh N. Detection of low-concentration host mRNA transcripts in Malawian children at risk for environmental enteropathy. J Pediatr Gastroenterol Nutr. 2013 Jan;56(1):66-71. doi: 10.1097/MPG.0b013e31826a107a. PMID: 22832511.
Saito JM, Yan Y, Evashwick TW, Warner BW, Tarr PI. Use and accuracy of diagnostic imaging by hospital type in pediatric appendicitis. Pediatrics. 2013 Jan;131(1):e37-44. doi: 10.1542/peds.2012-1665. Epub 2012 Dec 24. PMID: 23266930; PMCID: PMC3529953.
McNulty SN, Fischer K, Curtis KC, Weil GJ, Brattig NW, Fischer PU. Localization of Wolbachia-like gene transcripts and peptides in adult Onchocerca flexuosa worms indicates tissue specific expression. Parasit Vectors. 2013 Jan 2;6:2. doi: 10.1186/1756-3305-6-2. PMID: 23281896; PMCID: PMC3549793.
Colvin JM, Muenzer JT, Jaffe DM, Smason A, Deych E, Shannon WD, Arens MQ, Buller RS, Lee WM, Weinstock EJ, Weinstock GM, Storch GA. Detection of viruses in young children with fever without an apparent source. Pediatrics. 2012 Dec;130(6):e1455-62. doi: 10.1542/peds.2012-1391. Epub 2012 Nov 5. PMID: 23129086; PMCID: PMC3507256.
McElvania TeKippe E, Wylie KM, Deych E, Sodergren E, Weinstock G, Storch GA. Increased prevalence of anellovirus in pediatric patients with fever. PLoS One. 2012;7(11):e50937. doi: 10.1371/journal.pone.0050937. Epub 2012 Nov 30. PMID: 23226428; PMCID: PMC3511395.
Wylie KM, Weinstock GM, Storch GA. Emerging view of the human virome. Transl Res. 2012 Oct;160(4):283-90. doi: 10.1016/j.trsl.2012.03.006. Epub 2012 Apr 24. PMID: 22683423; PMCID: PMC3701101.
Denno DM, Shaikh N, Stapp JR, Qin X, Hutter CM, Hoffman V, Mooney JC, Wood KM, Stevens HJ, Jones R, Tarr PI, Klein EJ. Diarrhea etiology in a pediatric emergency department: a case control study. Clin Infect Dis. 2012 Oct;55(7):897-904. doi: 10.1093/cid/cis553. Epub 2012 Jun 14. PMID: 22700832; PMCID: PMC3657524.
Marcos LA, Arrospide N, Recuenco S, Cabezas C, Weil GJ, Fischer PU. Genetic characterization of atypical Mansonella (Mansonella) ozzardi microfilariae in human blood samples from northeastern Peru. Am J Trop Med Hyg. 2012 Sep;87(3):491-4. doi: 10.4269/ajtmh.2012.11-0379. Epub 2012 Jul 23. PMID: 22826497; PMCID: PMC3435353.
McNulty SN, Abubucker S, Simon GM, Mitreva M, McNulty NP, Fischer K, Curtis KC, Brattig NW, Weil GJ, Fischer PU. Transcriptomic and proteomic analyses of a Wolbachia-free filarial parasite provide evidence of trans-kingdom horizontal gene transfer. PLoS One. 2012;7(9):e45777. doi: 10.1371/journal.pone.0045777. Epub 2012 Sep 26. PMID: 23049857; PMCID: PMC3458923.
Jiang D, Malone J, Townsend R, Weil GJ, Li B. Multiplex proteomics analysis of gender-associated proteins in Brugia malayi. Int J Parasitol. 2012 Aug;42(9):841-50. doi: 10.1016/j.ijpara.2012.06.004. Epub 2012 Jul 20. PMID: 22819962; PMCID: PMC4901520.
Lane MA, Marcos LA, Onen NF, Demertzis LM, Hayes EV, Davila SZ, Nurutdinova DR, Bailey TC, Weil GJ. Paragonimus kellicotti flukes in Missouri, USA. Emerg Infect Dis. 2012 Aug;18(8):1263-7. doi: 10.3201/eid1808.120335. PMID: 22840191; PMCID: PMC3414046.
Wang Z, Zarlenga D, Martin J, Abubucker S, Mitreva M. Exploring metazoan evolution through dynamic and holistic changes in protein families and domains. BMC Evol Biol. 2012 Aug 3;12:138. doi: 10.1186/1471-2148-12-138. PMID: 22862991; PMCID: PMC3483195.
Wylie KM, Mihindukulasuriya KA, Sodergren E, Weinstock GM, Storch GA. Sequence analysis of the human virome in febrile and afebrile children. PLoS One. 2012;7(6):e27735. doi: 10.1371/journal.pone.0027735. Epub 2012 Jun 13. PMID: 22719819; PMCID: PMC3374612.
Abubucker S, Segata N, Goll J, Schubert AM, Izard J, Cantarel BL, Rodriguez- Mueller B, Zucker J, Thiagarajan M, Henrissat B, White O, Kelley ST, Methé B, Schloss PD, Gevers D, Mitreva M, Huttenhower C. Metabolic reconstruction for metagenomic data and its application to the human microbiome. PLoS Comput Biol. 2012;8(6):e1002358. doi: 10.1371/journal.pcbi.1002358. Epub 2012 Jun 13. PMID: 22719234; PMCID: PMC3374609.
Martin J, Sykes S, Young S, Kota K, Sanka R, Sheth N, Orvis J, Sodergren E, Wang Z, Weinstock GM, Mitreva M. Optimizing read mapping to reference genomes to determine composition and species prevalence in microbial communities. PLoS One. 2012;7(6):e36427. doi: 10.1371/journal.pone.0036427. Epub 2012 Jun 13. PMID: 22719831; PMCID: PMC3374613.
Memon IA, Parikh BA, Gaudreault-Keener M, Skelton R, Storch GA, Brennan DC. Progression from Sustained BK Viruria to Sustained BK Viremia with Immunosuppression Reduction Is Not Associated with Changes in the Noncoding Control Region of the BK Virus Genome. J Transplant. 2012;2012:761283. doi: 10.1155/2012/761283. Epub 2012 Jun 4. PMID: 22701777; PMCID: PMC3373156.
El Feghaly RE, Sutton DA, Thompson EH, Fu J, Wickes BL, Al-Zubeidi D, Storch GA, Burnham CA. Graphium basitruncatum fungemia in an immunosuppressed child post stem-cell transplantation. Med Mycol Case Rep. 2012 May 27;1(1):35-8. doi: 10.1016/j.mmcr.2012.05.003. PMID: 24371733; PMCID: PMC3854641.
Li BW, Wang Z, Rush AC, Mitreva M, Weil GJ. Transcription profiling reveals stage- and function-dependent expression patterns in the filarial nematode Brugia malayi. BMC Genomics. 2012 May 14;13:184. doi: 10.1186/1471-2164-13-184. PMID: 22583769; PMCID: PMC3414817.
McNulty SN, Mullin AS, Vaughan JA, Tkach VV, Weil GJ, Fischer PU. Comparing the mitochondrial genomes of Wolbachia-dependent and independent filarial nematode species. BMC Genomics. 2012 Apr 24;13:145. doi: 10.1186/1471-2164-13-145. PMID: 22530989; PMCID: PMC3409033.
Yamada M, Buller R, Bledsoe S, Storch GA. Rising rates of macrolide- resistant Mycoplasma pneumoniae in the central United States. Pediatr Infect Dis J. 2012 Apr;31(4):409-0. doi: 10.1097/INF.0b013e318247f3e0. PMID: 22209916.
McNulty SN, Fischer K, Mehus JO, Vaughan JA, Tkach VV, Weil GJ, Fischer PU. Absence of Wolbachia endobacteria in Chandlerella quiscali, an avian filarial parasite. J Parasitol. 2012 Apr;98(2):382-7. doi: 10.1645/GE-2879.1. Epub 2011 Oct 27. PMID: 22032328; PMCID: PMC5000782.
Martin J, Abubucker S, Heizer E, Taylor CM, Mitreva M. Nematode.net update addition of data sets and tools featuring next-generation sequencing data. Nucleic Acids Res. 2012 Jan;40(Database issue):D720-8. doi: 10.1093/nar/gkr1194. Epub 2011 Dec 1. PMID: 22139919; PMCID: PMC3245159.
Holtz LR, Wylie KM, Sodergren E, Jiang Y, Franz CJ, Weinstock GM, Storch GA, Wang D. Astrovirus MLB2 viremia in febrile child. Emerg Infect Dis. 2011 Nov;17(11):2050-2. doi: 10.3201/eid1711.110496. PMID: 22099095; PMCID: PMC3310569.
Hickey CA, Beattie TJ, Cowieson J, Miyashita Y, Strife CF, Frem JC, Peterson JM, Butani L, Jones DP, Havens PL, Patel HP, Wong CS, Andreoli SP, Rothbaum RJ, Beck AM, Tarr PI. Early volume expansion during diarrhea and relative nephroprotection during subsequent hemolytic uremic syndrome. Arch Pediatr Adolesc Med. 2011 Oct;165(10):884-9. doi: 10.1001/archpediatrics.2011.152. Epub 2011 Jul 22. PMID: 21784993; PMCID: PMC4064458.
Fritz SA, Camins BC, Eisenstein KA, Fritz JM, Epplin EK, Burnham CA, Dukes J, Storch GA. Effectiveness of measures to eradicate Staphylococcus aureus carriage in patients with community-associated skin and soft-tissue infections: a randomized trial. Infect Control Hosp Epidemiol. 2011 Sep;32(9):872-80. doi: 10.1086/661285. PMID: 21828967; PMCID: PMC3528015.
Weil GJ, Curtis KC, Fischer PU, Won KY, Lammie PJ, Joseph H, Melrose WD, Brattig NW. A multicenter evaluation of a new antibody test kit for lymphatic filariasis employing recombinant Brugia malayi antigen Bm-14. Acta Trop. 2011 Sep;120 Suppl 1(Suppl 1):S19-22. doi: 10.1016/j.actatropica.2010.04.010. Epub 2010 Apr 27. PMID: 20430004; PMCID: PMC2935504.
González-Rivera R, Culverhouse RC, Hamvas A, Tarr PI, Warner BB. The age of necrotizing enterocolitis onset: an application of Sartwell’s incubation period model. J Perinatol. 2011 Aug;31(8):519-23. doi: 10.1038/jp.2010.193. Epub 2011 Jan 27. PMID: 21273988; PMCID: PMC3145821.
Abubucker S, Martin J, Taylor CM, Mitreva M. HelmCoP: an online resource for helminth functional genomics and drug and vaccine targets prioritization. PLoS One. 2011;6(7):e21832. doi: 10.1371/journal.pone.0021832. Epub 2011 Jul 8. PMID: 21760913; PMCID: PMC3132748.
Watson ME Jr, Storch GA, Dunne WM Jr, Burnham CA. A 2-year-old female with Fever and rash. J Clin Microbiol. 2011 Jul;49(7):2389, 2784. doi: 10.1128/JCM.00081-11. PMID: 21719732; PMCID: PMC3147883.
Bucher BT, McDuffie LA, Shaikh N, Tarr PI, Warner BB, Hamvas A, White FV, Erwin CR, Warner BW. Bacterial DNA content in the intestinal wall from infants with necrotizing enterocolitis. J Pediatr Surg. 2011 Jun;46(6):1029-33. doi: 10.1016/j.jpedsurg.2011.03.026. PMID: 21683193; PMCID: PMC3118995.
Leopold SR, Sawyer SA, Whittam TS, Tarr PI. Obscured phylogeny and possible recombinational dormancy in Escherichia coli. BMC Evol Biol. 2011 Jun 27;11:183. doi: 10.1186/1471-2148-11-183. PMID: 21708031; PMCID: PMC3152902.
Fischer PU, Curtis KC, Marcos LA, Weil GJ. Molecular characterization of the North American lung fluke Paragonimus kellicotti in Missouri and its development in Mongolian gerbils. Am J Trop Med Hyg. 2011 Jun;84(6):1005-11. doi: 10.4269/ajtmh.2011.11-0027. PMID: 21633042; PMCID: PMC3110363.
Fischer K, Beatty WL, Jiang D, Weil GJ, Fischer PU. Tissue and stage- specific distribution of Wolbachia in Brugia malayi. PLoS Negl Trop Dis. 2011 May;5(5):e1174. doi: 10.1371/journal.pntd.0001174. Epub 2011 May 24. PMID: 21629728; PMCID: PMC3101188.
Cheng XS, Bohl DL, Storch GA, Ryschkewitsch C, Gaudreault-Keener M, Major EO, Randhawa P, Hardinger KL, Brennan DC. Inhibitory interactions between BK and JC virus among kidney transplant recipients. J Am Soc Nephrol. 2011 May;22(5):825-31. doi: 10.1681/ASN.2010080877. Epub 2011 Apr 21. PMID: 21511831; PMCID: PMC3269895.
Fritz SA, Krauss MJ, Epplin EK, Burnham CA, Garbutt J, Dunne WM, Hunstad DA, Storch GA. The natural history of contemporary Staphylococcus aureus nasal colonization in community children. Pediatr Infect Dis J. 2011 Apr;30(4):349-51. doi: 10.1097/INF.0b013e3181fe075e. PMID: 21412205; PMCID: PMC3077955.
Taylor CM, Fischer K, Abubucker S, Wang Z, Martin J, Jiang D, Magliano M, Rosso MN, Li BW, Fischer PU, Mitreva M. Targeting protein-protein interactions for parasite control. PLoS One. 2011 Apr 27;6(4):e18381. doi: 10.1371/journal.pone.0018381. PMID: 21556146; PMCID: PMC3083401.
Mitreva M, Jasmer DP, Zarlenga DS, Wang Z, Abubucker S, Martin J, Taylor CM, Yin Y, Fulton L, Minx P, Yang SP, Warren WC, Fulton RS, Bhonagiri V, Zhang X, Hallsworth-Pepin K, Clifton SW, McCarter JP, Appleton J, Mardis ER, Wilson RK. The draft genome of the parasitic nematode Trichinella spiralis. Nat Genet. 2011 Mar;43(3):228-35. doi: 10.1038/ng.769. Epub 2011 Feb 20. PMID: 21336279; PMCID: PMC3057868.
Ye L, Hillier LW, Minx P, Thane N, Locke DP, Martin JC, Chen L, Mitreva M, Miller JR, Haub KV, Dooling DJ, Mardis ER, Wilson RK, Weinstock GM, Warren WC. A vertebrate case study of the quality of assemblies derived from next-generation sequences. Genome Biol. 2011;12(3):R31. doi: 10.1186/gb-2011-12-3-r31. Epub 2011 Mar 31. PMID: 21453517; PMCID: PMC3129681.
Dubberke ER, Haslam DB, Lanzas C, Bobo LD, Burnham CA, Gröhn YT, Tarr PI. The ecology and pathobiology of Clostridium difficile infections: an interdisciplinary challenge. Zoonoses Public Health. 2011 Feb;58(1):4-20. doi: 10.1111/j.1863-2378.2010.01352.x. Epub 2010 Sep 24. PMID: 21223531; PMCID: PMC3668351.
Locke DP, Hillier LW, Warren WC, Worley KC, Nazareth LV, Muzny DM, Yang SP, Wang Z, Chinwalla AT, Minx P, Mitreva M, Cook L, Delehaunty KD, Fronick C, Schmidt H, Fulton LA, Fulton RS, Nelson JO, Magrini V, Pohl C, Graves TA, Markovic C, Cree A, Dinh HH, Hume J, Kovar CL, Fowler GR, Lunter G, Meader S, Heger A, Ponting CP, Marques-Bonet T, Alkan C, Chen L, Cheng Z, Kidd JM, Eichler EE, White S, Searle S, Vilella AJ, Chen Y, Flicek P, Ma J, Raney B, Suh B, Burhans R, Herrero J, Haussler D, Faria R, Fernando O, Darré F, Farré D, Gazave E, Oliva M, Navarro A, Roberto R, Capozzi O, Archidiacono N, Della Valle G, Purgato S, Rocchi M, Konkel MK, Walker JA, Ullmer B, Batzer MA, Smit AF, Hubley R, Casola C, Schrider DR, Hahn MW, Quesada V, Puente XS, Ordoñez GR, López-Otín C, Vinar T, Brejova B, Ratan A, Harris RS, Miller W, Kosiol C, Lawson HA, Taliwal V, Martins AL, Siepel A, Roychoudhury A, Ma X, Degenhardt J, Bustamante CD, Gutenkunst RN, Mailund T, Dutheil JY, Hobolth A, Schierup MH, Ryder OA, Yoshinaga Y, de Jong PJ, Weinstock GM, Rogers J, Mardis ER, Gibbs RA, Wilson RK. Comparative and demographic analysis of orang-utan genomes. Nature. 2011 Jan 27;469(7331):529-33. doi: 10.1038/nature09687. PMID: 21270892; PMCID: PMC3060778.
Li BW, Rush AC, Jiang DJ, Mitreva M, Abubucker S, Weil GJ. Gender-associated genes in filarial nematodes are important for reproduction and potential intervention targets. PLoS Negl Trop Dis. 2011 Jan 25;5(1):e947. doi: 10.1371/journal.pntd.0000947. PMID: 21283610; PMCID: PMC3026763.
Leopold SR, Shaikh N, Tarr PI. Further evidence of constrained radiation in the evolution of pathogenic Escherichia coli O157:H7. Infect Genet Evol. 2010 Dec;10(8):1282-5. doi: 10.1016/j.meegid.2010.07.021. Epub 2010 Aug 5. PMID: 20691811; PMCID: PMC3742067.
Mitreva M, Jasmer DP. Trichinella spiralis: genomic application to control a zoonotic nematode. Infect Disord Drug Targets. 2010 Oct;10(5):376-84. doi: 10.2174/187152610793180830. PMID: 20701572.
Allan BF, Dutra HP, Goessling LS, Barnett K, Chase JM, Marquis RJ, Pang G, Storch GA, Thach RE, Orrock JL. Invasive honeysuckle eradication reduces tick- borne disease risk by altering host dynamics. Proc Natl Acad Sci U S A. 2010 Oct 26;107(43):18523-7. doi: 10.1073/pnas.1008362107. Epub 2010 Oct 11. PMID: 20937859; PMCID: PMC2973004.
Gao X, Wang Z, Martin J, Abubucker S, Zhang X, Mitreva M, Hawdon JM. Identification of hookworm DAF-16/FOXO response elements and direct gene targets. PLoS One. 2010 Aug 19;5(8):e12289. doi: 10.1371/journal.pone.0012289. PMID: 20808816; PMCID: PMC2924398.
Spinner ML, Saab G, Casabar E, Bowman LJ, Storch GA, Brennan DC. Impact of prophylactic versus preemptive valganciclovir on long-term renal allograft outcomes. Transplantation. 2010 Aug 27;90(4):412-8. doi: 10.1097/TP.0b013e3181e81afc. PMID: 20555305; PMCID: PMC2924927.
Sumino KC, Walter MJ, Mikols CL, Thompson SA, Gaudreault-Keener M, Arens MQ, Agapov E, Hormozdi D, Gaynor AM, Holtzman MJ, Storch GA. Detection of respiratory viruses and the associated chemokine responses in serious acute respiratory illness. Thorax. 2010 Jul;65(7):639-44. doi: 10.1136/thx.2009.132480. PMID: 20627924; PMCID: PMC3018337.
Bennett WE Jr, González-Rivera R, Puente BN, Shaikh N, Stevens HJ, Mooney JC, Klein EJ, Denno DM, Draghi A II, Sylvester FA, Tarr PI. Proinflammatory fecal mRNA and childhood bacterial enteric infections. Gut Microbes. 2010 Jul;1(4):209-212. doi: 10.4161/gmic.1.4.13004. Epub 2010 Jul 13. PMID: 21327027; PMCID: PMC3023602.
Arens MQ, Buller RS, Rankin A, Mason S, Whetsell A, Agapov E, Lee WM, Storch GA. Comparison of the Eragen Multi-Code Respiratory Virus Panel with conventional viral testing and real-time multiplex PCR assays for detection of respiratory viruses. J Clin Microbiol. 2010 Jul;48(7):2387-95. doi: 10.1128/JCM.00220-10. Epub 2010 May 19. PMID: 20484608; PMCID: PMC2897522.
McNulty SN, Foster JM, Mitreva M, Dunning Hotopp JC, Martin J, Fischer K, Wu B, Davis PJ, Kumar S, Brattig NW, Slatko BE, Weil GJ, Fischer PU. Endosymbiont DNA in endobacteria-free filarial nematodes indicates ancient horizontal genetic transfer. PLoS One. 2010 Jun 9;5(6):e11029. doi: 10.1371/journal.pone.0011029. PMID: 20543958; PMCID: PMC2882956.
Wang Z, Abubucker S, Martin J, Wilson RK, Hawdon J, Mitreva M. Characterizing Ancylostoma caninum transcriptome and exploring nematode parasitic adaptation. BMC Genomics. 2010 May 14;11:307. doi: 10.1186/1471-2164-11-307. PMID: 20470405; PMCID: PMC2882930.
Hormozdi DJ, Arens MQ, Le BM, Buller RS, Agapov E, Storch GA. KI polyomavirus detected in respiratory tract specimens from patients in St. Louis, Missouri. Pediatr Infect Dis J. 2010 Apr;29(4):329-33. doi: 10.1097/INF.0b013e3181c1795c. PMID: 19949359.
Allan BF, Goessling LS, Storch GA, Thach RE. Blood meal analysis to identify reservoir hosts for Amblyomma americanum ticks. Emerg Infect Dis. 2010 Mar;16(3):433-40. doi: 10.3201/eid1603.090911. PMID: 20202418; PMCID: PMC3322017.
Weyher AH, Phillips-Conroy JE, Fischer K, Weil GJ, Chansa W, Fischer PU. Molecular identification of Schistosoma mattheei from feces of Kinda (Papio cynocephalus kindae) and grayfoot baboons (Papio ursinus griseipes) in Zambia. J Parasitol. 2010 Feb;96(1):184-90. doi: 10.1645/GE-2186.1. PMID: 19697970.
Fritz SA, Epplin EK, Garbutt J, Storch GA. Skin infection in children colonized with community-associated methicillin-resistant Staphylococcus aureus. J Infect. 2009 Dec;59(6):394-401. doi: 10.1016/j.jinf.2009.09.001. Epub 2009 Sep 9. PMID: 19747505; PMCID: PMC2788074.
Erickson SM, Fischer K, Weil GJ, Christensen BM, Fischer PU. Distribution of Brugia malayi larvae and DNA in vector and non-vector mosquitoes: implications for molecular diagnostics. Parasit Vectors. 2009 Nov 17;2(1):56. doi: 10.1186/1756-3305-2-56. PMID: 19922607; PMCID: PMC2781795.
Ahn CK, Russo AJ, Howell KR, Holt NJ, Sellenriek PL, Rothbaum RJ, Beck AM, Luebbering LJ, Tarr PI. Deer sausage: a newly identified vehicle of transmission of Escherichia coli O157:H7. J Pediatr. 2009 Oct;155(4):587-9. doi: 10.1016/j.jpeds.2009.02.051. PMID: 19773004.
Brindley PJ, Mitreva M, Ghedin E, Lustigman S. Helminth genomics: The implications for human health. PLoS Negl Trop Dis. 2009 Oct 26;3(10):e538. doi: 10.1371/journal.pntd.0000538. PMID: 19855829; PMCID: PMC2757907.
Bennett WE Jr, González-Rivera R, Shaikh N, Magrini V, Boykin M, Warner BB, Hamvas A, Tarr PI. A method for isolating and analyzing human mRNA from newborn stool. J Immunol Methods. 2009 Sep 30;349(1-2):56-60. doi: 10.1016/j.jim.2009.07.013. Epub 2009 Aug 3. PMID: 19660464; PMCID: PMC2850193.
Lane MA, Barsanti MC, Santos CA, Yeung M, Lubner SJ, Weil GJ. Human paragonimiasis in North America following ingestion of raw crayfish. Clin Infect Dis. 2009 Sep 15;49(6):e55-61. doi: 10.1086/605534. PMID: 19681705.
Orscheln RC, Hunstad DA, Fritz SA, Loughman JA, Mitchell K, Storch EK, Gaudreault M, Sellenriek PL, Armstrong JR, Mardis ER, Storch GA. contribution of genetically restricted, methicillin-susceptible strains to the ongoing epidemic of community-acquired Staphylococcus aureus infections. Clin Infect Dis. 2009 Aug 15;49(4):536-42. doi: 10.1086/600881. PMID: 19589082; PMCID: PMC2965061.
Kuhlmann FM, Weil GJ. Infectious risks for travelers to the tropics. Mo Med. 2009 Jul-Aug;106(4):263-8. PMID: 19753917.
Masters EJ, Storch GA, Sumner JW. Ehrlichia ewingii in an immunocompetent adult. Mo Med. 2009 Jul-Aug;106(4):301-3. PMID: 19753925.
Lawrence KL, Morrell MR, Storch GA, Hachem RR, Trulock EP. Clinical outcomes of solid organ transplant recipients with ehrlichiosis. Transpl Infect Dis. 2009 Jun;11(3):203-10. doi: 10.1111/j.1399-3062.2009.00373.x. Epub 2009 Feb 18. PMID: 19228344.
Li BW, Rush AC, Mitreva M, Yin Y, Spiro D, Ghedin E, Weil GJ. Transcriptomes and pathways associated with infectivity, survival and immunogenicity in Brugia malayi L3. BMC Genomics. 2009 Jun 15;10:267. doi: 10.1186/1471-2164-10-267. PMID: 19527522; PMCID: PMC2708187.
Holtz LR, Neill MA, Tarr PI. Acute bloody diarrhea: a medical emergency for patients of all ages. Gastroenterology. 2009 May;136(6):1887-98. doi: 10.1053/j.gastro.2009.02.059. Epub 2009 May 7. PMID: 19457417.
Abubucker S, Zarlenga DS, Martin J, Yin Y, Wang Z, McCarter JP, Gasbarree L, Wilson RK, Mitreva M. The transcriptomes of the cattle parasitic nematode Ostertagia ostartagi. Vet Parasitol. 2009 May 26;162(1-2):89-99. doi: 10.1016/j.vetpar.2009.02.023. Epub 2009 Feb 27. PMID: 19346077; PMCID: PMC2677129.
Leopold SR, Magrini V, Holt NJ, Shaikh N, Mardis ER, Cagno J, Ogura Y, Iguchi A, Hayashi T, Mellmann A, Karch H, Besser TE, Sawyer SA, Whittam TS, Tarr PI. A precise reconstruction of the emergence and constrained radiations of Escherichia coli O157 portrayed by backbone concatenomic analysis. Proc Natl Acad Sci U S A. 2009 May 26;106(21):8713-8. doi: 10.1073/pnas.0812949106. Epub 2009 May 13. PMID: 19439656; PMCID: PMC2689004.
Pollock KGJ, Stewart A, Beattie TJ, Todd WTA, Ahn CK, Tarr PI, Cowden JM. From diarrhoea to haemolytic uraemic syndrome – when to seek advice. J Med Microbiol. 2009 Apr;58(Pt 4):397-398. doi: 10.1099/jmm.0.007179-0. PMID: 19273631.
Rao RU, Huang Y, Bockarie MJ, Susapu M, Laney SJ, Weil GJ. A qPCR-based multiplex assay for the detection of Wuchereria bancrofti, Plasmodium falciparum and Plasmodium vivax DNA. Trans R Soc Trop Med Hyg. 2009 Apr;103(4):365-70. doi: 10.1016/j.trstmh.2008.07.012. Epub 2008 Sep 17. PMID: 18801545; PMCID: PMC2713189.
Finkbeiner SR, Le BM, Holtz LR, Storch GA, Wang D. Detection of newly described astrovirus MLB1 in stool samples from children. Emerg Infect Dis. 2009 Mar;15(3):441-4. doi: 10.3201/eid1503.081213. PMID: 19239759; PMCID: PMC2666294.
Yin Y, Martin J, Abubucker S, Wang Z, Wyrwicz L, Rychlewski L, McCarter JP, Wilson RK, Mitreva M. Molecular determinants archetypical to the phylum Nematoda. BMC Genomics. 2009 Mar 18;10:114. doi: 10.1186/1471-2164-10-114. PMID: 19296854; PMCID: PMC2666764.
Loughman JA, Fritz SA, Storch GA, Hunstad DA. Virulence gene expression in human community-acquired Staphylococcus aureus infection. J Infect Dis. 2009 Feb 1;199(3):294-301. doi: 10.1086/595982. PMID: 19115951; PMCID: PMC2843142.
Tarr PI. Shiga toxin-associated hemolytic uremic syndrome and thrombotic thrombocytopenic purpura: distinct mechanisms of pathogenesis. Kidney Int Suppl. 2009 Feb;(112):S29-32. doi: 10.1038/ki.2008.615. PMID: 19180128.
Zarlenga DS, Rosenthal B, Hoberg E, Mitreva M. Integrating genomics and phylogenetics in understanding the history of Trichinella species. Vet Parasitol. 2009 Feb 23;159(3-4):210-3. doi: 10.1016/j.vetpar.2008.10.061. Epub 2008 Oct 22. PMID: 19046815.
Martin J, Abubucker S, Wylie T, Yin Y, Wang Z, Mitreva M. Nematode.net update 2008: improvements enabling more efficient data mining and comparative nematode genomics. Nucleic Acids Res. 2009 Jan;37(Database issue):D571-8. doi: 10.1093/nar/gkn744. Epub 2008 Oct 21. PMID: 18940860; PMCID: PMC2686480.
Rao RU, Huang Y, Fischer K, Fischer PU, Weil GJ. Brugia malayi: Effects of nitazoxanide and tizoxanide on adult worms and microfilariae of filarial nematodes. Exp Parasitol. 2009 Jan;121(1):38-45. doi: 10.1016/j.exppara.2008.09.020. Epub 2008 Oct 17. PMID: 18977224.
Wang Z, Martin J, Abubucker S, Yin Y, Gasser RB, Mitreva M. Systematic analysis of insertions and deletions specific to nematode proteins and their proposed functional and evolutionary relevance. BMC Evol Biol. 2009 Jan 28;9:23. doi: 10.1186/1471-2148-9-23. PMID: 19175938; PMCID: PMC2644674.
Bennett WE Jr, Tarr PI. Enteric infections and diagnostic testing. Curr Opin Gastroenterol. 2009 Jan;25(1):1-7. doi: 10.1097/MOG.0b013e32831ba094. PMID: 19114768.
Weil GJ, Kastens W, Susapu M, Laney SJ, Williams SA, King CL, Kazura JW, Bockarie MJ. The impact of repeated rounds of mass drug administration with diethylcarbamazine plus albendazole on bancroftian filariasis in Papua New Guinea. PLoS Negl Trop Dis. 2008;2(12):e344. doi: 10.1371/journal.pntd.0000344. Epub 2008 Dec 9. PMID: 19065257; PMCID: PMC2586652.
Tarr PI. The late 1970s: a lull in the action on kuru. Philos Trans R Soc Lond B Biol Sci. 2008 Nov 27;363(1510):3668-70. doi: 10.1098/rstb.2008.4033. PMID: 18849276; PMCID: PMC2735550.
Wylie T, Martin J, Abubucker S, Yin Y, Messina D, Wang Z, McCarter JP, Mitreva M. NemaPath: online exploration of KEGG-based metabolic pathways for nematodes. BMC Genomics. 2008 Nov 4;9:525. doi: 10.1186/1471-2164-9-525. PMID: 18983679; PMCID: PMC2588608.
Watson ME Jr, Storch GA. Recurrent Mycoplasma pneumoniae infection in a human immunodeficiency virus-positive child. Pediatr Infect Dis J. 2008 Nov;27(11):1037-8. doi: 10.1097/inf.0b013e318178276b. PMID: 18985833.
Bohl DL, Brennan DC, Ryschkewitsch C, Gaudreault-Keener M, Major EO, Storch GA. BK virus antibody titers and intensity of infections after renal transplantation. J Clin Virol. 2008 Oct;43(2):184-9. doi: 10.1016/j.jcv.2008.06.009. Epub 2008 Aug 3. PMID: 18676176; PMCID: PMC2701220.
Warren WC, Hillier LW, Marshall Graves JA, Birney E, Ponting CP, Grützner F, Belov K, Miller W, Clarke L, Chinwalla AT, Yang SP, Heger A, Locke DP, Miethke P, Waters PD, Veyrunes F, Fulton L, Fulton B, Graves T, Wallis J, Puente XS, López-Otín C, Ordóñez GR, Eichler EE, Chen L, Cheng Z, Deakin JE, Alsop A, Thompson K, Kirby P, Papenfuss AT, Wakefield MJ, Olender T, Lancet D, Huttley GA, Smit AF, Pask A, Temple-Smith P, Batzer MA, Walker JA, Konkel MK, Harris RS, Whittington CM, Wong ES, Gemmell NJ, Buschiazzo E, Vargas Jentzsch IM, Merkel A, Schmitz J, Zemann A, Churakov G, Kriegs JO, Brosius J, Murchison EP, Sachidanandam R, Smith C, Hannon GJ, Tsend-Ayush E, McMillan D, Attenborough R, Rens W, Ferguson-Smith M, Lefèvre CM, Sharp JA, Nicholas KR, Ray DA, Kube M, Reinhardt R, Pringle TH, Taylor J, Jones RC, Nixon B, Dacheux JL, Niwa H, Sekita Y, Huang X, Stark A, Kheradpour P, Kellis M, Flicek P, Chen Y, Webber C, Hardison R, Nelson J, Hallsworth-Pepin K, Delehaunty K, Markovic C, Minx P, Feng Y, Kremitzki C, Mitreva M, Glasscock J, Wylie T, Wohldmann P, Thiru P, Nhan MN, Pohl CS, Smith SM, Hou S, Nefedov M, de Jong PJ, Renfree MB, Mardis ER, Wilson RK. Genome analysis of the platypus reveals unique signatures of evolution. Nature. 2008 May 8;453(7192):175-83. doi: 10.1038/nature06936. Erratum in: Nature. 2008 Sep 11;455(7210):256. Nefedov, Mikhail [added]; de Jong, Pieter J [added]. PMID: 18464734; PMCID: PMC2803040.
Yin Y, Martin J, Abubucker S, Scott AL, McCarter JP, Wilson RK, Jasmer DP, Mitreva M. Intestinal transcriptomes of nematodes: comparison of the parasites Ascaris suum and Haemonchus contortus with the free-living Caenorhabditis elegans. PLoS Negl Trop Dis. 2008 Aug 6;2(8):e269. doi: 10.1371/journal.pntd.0000269. PMID: 18682827; PMCID: PMC2483350.
Mitreva M, Jasmer DP. Advances in the sequencing of the genome of the adenophorean nematode Trichinella spiralis. Parasitology. 2008 Jul;135(8):869-80. doi: 10.1017/S0031182008004472. PMID: 18598573; PMCID: PMC3718030.
McNulty SN, Weil GJ, Heinz M, Crosby SD, Fischer PU. Brugia malayi: whole genome amplification for genomic characterization of filarial parasites. Exp Parasitol. 2008 Jun;119(2):256-63. doi: 10.1016/j.exppara.2008.02.003. Epub 2008 Feb 19. PMID: 18359019.
Fritz SA, Garbutt J, Elward A, Shannon W, Storch GA. Prevalence of and risk factors for community-acquired methicillin-resistant and methicillin-sensitive staphylococcus aureus colonization in children seen in a practice-based research network. Pediatrics. 2008 Jun;121(6):1090-8. doi: 10.1542/peds.2007-2104. PMID: 18519477.
Dubberke ER, Weil GJ. A woman from Honduras with a painful forearm and fever. Am J Trop Med Hyg. 2008 May;78(5):697-8. PMID: 18458298.
Jiang D, Li BW, Fischer PU, Weil GJ. Localization of gender-regulated gene expression in the filarial nematode Brugia malayi. Int J Parasitol. 2008 Apr;38(5):503-12. doi: 10.1016/j.ijpara.2007.09.010. Epub 2007 Oct 9. PMID: 18001741.
Finkbeiner SR, Allred AF, Tarr PI, Klein EJ, Kirkwood CD, Wang D. Metagenomic analysis of human diarrhea: viral detection and discovery. PLoS Pathog. 2008 Feb 29;4(2):e1000011. doi: 10.1371/journal.ppat.1000011. PMID: 18398449; PMCID: PMC2290972.
Abubucker S, Martin J, Yin Y, Fulton L, Yang SP, Hallsworth-Pepin K, Johnston JS, Hawdon J, McCarter JP, Wilson RK, Mitreva M. The canine hookworm genome: analysis and classification of Ancylostoma caninum survey sequences. Mol Biochem Parasitol. 2008 Feb;157(2):187-92. doi: 10.1016/j.molbiopara.2007.11.001. Epub 2007 Nov 9. PMID: 18082904; PMCID: PMC2265417.
Le BM, Demertzis LM, Wu G, Tibbets RJ, Buller R, Arens MQ, Gaynor AM, Storch GA, Wang D. Clinical and epidemiologic characterization of WU polyomavirus infection, St. Louis, Missouri. Emerg Infect Dis. 2007 Dec;13(12):1936-8. doi: 10.3201/eid1312.070977. PMID: 18258052; PMCID: PMC2876771.
Jones JC, Rogers TJ, Brookmeyer P, Dunne WM Jr, Storch GA, Coopersmith CM, Fraser VJ, Warren DK. Mupirocin resistance in patients colonized with methicillin-resistant Staphylococcus aureus in a surgical intensive care unit. Clin Infect Dis. 2007 Sep 1;45(5):541-7. doi: 10.1086/520663. Epub 2007 Jul 13. PMID: 17682986.
Shaikh N, Holt NJ, Johnson JR, Tarr PI. Fim operon variation in the emergence of Enterohemorrhagic Escherichia coli: an evolutionary and functional analysis. FEMS Microbiol Lett. 2007 Aug;273(1):58-63. doi: 10.1111/j.1574-6968.2007.00781.x. Epub 2007 Jun 6. PMID: 17559392.
Mitreva M, Zarlenga DS, McCarter JP, Jasmer DP. Parasitic nematodes – from genomes to control. Vet Parasitol. 2007 Aug 19;148(1):31-42. doi: 10.1016/j.vetpar.2007.05.008. Epub 2007 Jun 7. PMID: 17560034.
Elizur A, Orscheln RC, Ferkol TW, Atkinson JJ, Dunne WM Jr, Buller RS, Armstrong JR, Mardis ER, Storch GA, Cannon CL. Panton-Valentine Leukocidin- positive methicillin-resistant Staphylococcus aureus lung infection in patients with cystic fibrosis. Chest. 2007 Jun;131(6):1718-25. doi: 10.1378/chest.06-2756. Epub 2007 Mar 30. PMID: 17400676.
Spivey JF, Singleton D, Sweet S, Storch GA, Hayashi RJ, Huddleston CB, Danziger-Isakov LA. Safety and efficacy of prolonged cytomegalovirus prophylaxis with intravenous ganciclovir in pediatric and young adult lung transplant recipients. Pediatr Transplant. 2007 May;11(3):312-8. doi: 10.1111/j.1399-3046.2006.00626.x. PMID: 17430489; PMCID: PMC1930168.
Gaynor AM, Nissen MD, Whiley DM, Mackay IM, Lambert SB, Wu G, Brennan DC, Storch GA, Sloots TP, Wang D. Identification of a novel polyomavirus from patients with acute respiratory tract infections. PLoS Pathog. 2007 May 4;3(5):e64. doi: 10.1371/journal.ppat.0030064. PMID: 17480120; PMCID: PMC1864993.
Fischer P, Erickson SM, Fischer K, Fuchs JF, Rao RU, Christensen BM, Weil GJ. Persistence of Brugia malayi DNA in vector and non-vector mosquitoes: implications for xenomonitoring and transmission monitoring of lymphatic filariasis. Am J Trop Med Hyg. 2007 Mar;76(3):502-7. PMID: 17360875; PMCID: PMC2196403.
Uhlmann EJ, Seed PC, Schwan TG, Storch GA. Tick-borne relapsing fever polymerase chain reaction of tick-borne relapsing fever caused by Borrelia hermsii. Pediatr Infect Dis J. 2007 Mar;26(3):267-9. doi: 10.1097/01.inf.0000254392.99545.69. PMID: 17484230.
Weil GJ, Ramzy RM. Diagnostic tools for filariasis elimination programs. Trends Parasitol. 2007 Feb;23(2):78-82. doi: 10.1016/j.pt.2006.12.001. Epub 2006 Dec 14. PMID: 17174604.
Mitreva M, Jasmer DP. Biology and genome of Trichinella spiralis. WormBook. 2006 Nov 23:1-21. doi: 10.1895/wormbook.1.124.1. PMID: 18050431; PMCID: PMC4781409.
Rao RU, Weil GJ, Fischer K, Supali T, Fischer P. Detection of Brugia parasite DNA in human blood by real-time PCR. J Clin Microbiol. 2006 Nov;44(11):3887-93. doi: 10.1128/JCM.00969-06. Epub 2006 Sep 6. PMID: 16957038; PMCID: PMC1698366.
Li BW, Rush AC, Weil GJ, McCarter JP, Mitreva M. Brugia malayi: effects of radiation and culture on gene expression in infective larvae. Mol Biochem Parasitol. 2006 Oct;149(2):201-7. doi: 10.1016/j.molbiopara.2006.05.013. Epub 2006 Jun 22. PMID: 16824625.
Khoury JA, Storch GA, Bohl DL, Schuessler RM, Torrence SM, Lockwood M, Gaudreault-Keener M, Koch MJ, Miller BW, Hardinger KL, Schnitzler MA, Brennan DC. Prophylactic versus preemptive oral valganciclovir for the management of cytomegalovirus infection in adult renal transplant recipients. Am J Transplant. 2006 Sep;6(9):2134-43. doi: 10.1111/j.1600-6143.2006.01413.x. Epub 2006 Jun 19. PMID: 16780548.
Garbutt J, Rosenbloom I, Wu J, Storch GA. Empiric first-line antibiotic treatment of acute otitis in the era of the heptavalent pneumococcal conjugate vaccine. Pediatrics. 2006 Jun;117(6):e1087-94. doi: 10.1542/peds.2005-2651. PMID: 16740811.
Liao RS, Storch GA, Buller RS, Orscheln RC, Mardis ER, Armstrong JR, Dunne WM Jr. Blinded comparison of repetitive-sequence PCR and multilocus sequence typing for genotyping methicillin-resistant Staphylococcus aureus isolates from a children’s hospital in St. Louis, Missouri. J Clin Microbiol. 2006 Jun;44(6):2254-7. doi: 10.1128/JCM.00690-06. PMID: 16757633; PMCID: PMC1489435.
Dubberke ER, Tu B, Rivet DJ, Storch GA, Apisarnthanarak A, Schmidt RE, Weiss S, Polish LB. Acute meningoencephalitis caused by adenovirus serotype 26. J Neurovirol. 2006 Jun;12(3):235-40. doi: 10.1080/13550280600846633. PMID: 16877305.
Yin Y, Martin J, McCarter JP, Clifton SW, Wilson RK, Mitreva M. Identification and analysis of genes expressed in the adult filarial parasitic nematode Dirofilaria immitis. Int J Parasitol. 2006 Jun;36(7):829-39. doi: 10.1016/j.ijpara.2006.03.002. Epub 2006 Mar 31. PMID: 16697384.
Rao RU, Atkinson LJ, Ramzy RM, Helmy H, Farid HA, Bockarie MJ, Susapu M, Laney SJ, Williams SA, Weil GJ. A real-time PCR-based assay for detection of Wuchereria bancrofti DNA in blood and mosquitoes. Am J Trop Med Hyg. 2006 May;74(5):826-32. PMID: 16687688; PMCID: PMC2196401.
Agapov E, Sumino KC, Gaudreault-Keener M, Storch GA, Holtzman MJ. Genetic variability of human metapneumovirus infection: evidence of a shift in viral genotype without a change in illness. J Infect Dis. 2006 Feb 1;193(3):396-403. doi: 10.1086/499310. Epub 2005 Dec 28. PMID: 16388487.
Verkruyse LA, Storch GA, Devine SM, Dipersio JF, Vij R. Once daily ganciclovir as initial pre-emptive therapy delayed until threshold CMV load > or =10000 copies/ml: a safe and effective strategy for allogeneic stem cell transplant patients. Bone Marrow Transplant. 2006 Jan;37(1):51-6. doi: 10.1038/sj.bmt.1705213. PMID: 16284613.
Khan A, Su C, German M, Storch GA, Clifford DB, Sibley LD. Genotyping of Toxoplasma gondii strains from immunocompromised patients reveals high prevalence of type I strains. J Clin Microbiol. 2005 Dec;43(12):5881-7. doi: 10.1128/JCM.43.12.5881-5887.2005. PMID: 16333071; PMCID: PMC1317192.
Rao R, Moussa H, Vanderwaal RP, Sampson E, Atkinson LJ, Weil GJ. Effects of gamma radiation on Brugia malayi infective larvae and their intracellular Wolbachia bacteria. Parasitol Res. 2005 Oct;97(3):219-27. doi: 10.1007/s00436-005-1421-8. Epub 2005 Jul 5. PMID: 15997407.
Mitreva M, Blaxter ML, Bird DM, McCarter JP. Comparative genomics of nematodes. Trends Genet. 2005 Oct;21(10):573-81. doi: 10.1016/j.tig.2005.08.003. PMID: 16099532.
Bohl DL, Storch GA, Ryschkewitsch C, Gaudreault-Keener M, Schnitzler MA, Major EO, Brennan DC. Donor origin of BK virus in renal transplantation and role of HLA C7 in susceptibility to sustained BK viremia. Am J Transplant. 2005 Sep;5(9):2213-21. doi: 10.1111/j.1600-6143.2005.01000.x. PMID: 16095500.
Li BW, Rush AC, Crosby SD, Warren WC, Williams SA, Mitreva M, Weil GJ. Profiling of gender-regulated gene transcripts in the filarial nematode Brugia malayi by cDNA oligonucleotide array analysis. Mol Biochem Parasitol. 2005 Sep;143(1):49-57. doi: 10.1016/j.molbiopara.2005.05.005. PMID: 15992941.
Sumino KC, Agapov E, Pierce RA, Trulock EP, Pfeifer JD, Ritter JH, Gaudreault-Keener M, Storch GA, Holtzman MJ. Detection of severe human metapneumovirus infection by real-time polymerase chain reaction and histopathological assessment. J Infect Dis. 2005 Sep 15;192(6):1052-60. doi: 10.1086/432728. Epub 2005 Aug 4. PMID: 16107959; PMCID: PMC7202407.
Mitreva M, Appleton J, McCarter JP, Jasmer DP. Expressed sequence tags from life cycle stages of Trichinella spiralis: application to biology and parasite control. Vet Parasitol. 2005 Sep 5;132(1-2):13-7. doi: 10.1016/j.vetpar.2005.05.023. PMID: 15993542.
Snyder MD, Storch GA, Clifford DB. Atypical PML leading to a diagnosis of common variable immunodeficiency. Neurology. 2005 May 10;64(9):1661. doi: 10.1212/01.WNL.0000160385.43633.34. PMID: 15883345.
Mitreva M, McCarter JP, Arasu P, Hawdon J, Martin J, Dante M, Wylie T, Xu J, Stajich JE, Kapulkin W, Clifton SW, Waterston RH, Wilson RK. Investigating hookworm genomes by comparative analysis of two Ancylostoma species. BMC Genomics. 2005 Apr 26;6:58. doi: 10.1186/1471-2164-6-58. PMID: 15854223; PMCID: PMC1112591.
Orscheln RC, Johnson DR, Olson SM, Presti RM, Martin JM, Kaplan EL, Storch GA. Intrinsic reduced susceptibility of serotype 6 Streptococcus pyogenes to fluoroquinolone antibiotics. J Infect Dis. 2005 Apr 15;191(8):1272-9. doi: 10.1086/428856. Epub 2005 Mar 7. PMID: 15776373.
Brennan DC, Agha I, Bohl DL, Schnitzler MA, Hardinger KL, Lockwood M, Torrence S, Schuessler R, Roby T, Gaudreault-Keener M, Storch GA. Incidence of BK with tacrolimus versus cyclosporine and impact of preemptive immunosuppression reduction. Am J Transplant. 2005 Mar;5(3):582-94. doi: 10.1111/j.1600-6143.2005.00742.x. Erratum in: Am J Transplant. 2005 Apr;5(4 Pt 1):839. PMID: 15707414.
Tarr PI, Gordon CA, Chandler WL. Shiga-toxin-producing Escherichia coli and haemolytic uraemic syndrome. Lancet. 2005 Mar 19-25;365(9464):1073-86. doi: 10.1016/S0140-6736(05)71144-2. PMID: 15781103.
Johnson JR, Jelacic S, Schoening LM, Clabots C, Shaikh N, Mobley HL, Tarr PI. The IrgA homologue adhesin Iha is an Escherichia coli virulence factor in murine urinary tract infection. Infect Immun. 2005 Feb;73(2):965-71. doi: 10.1128/IAI.73.2.965-971.2005. PMID: 15664939; PMCID: PMC546986.
Rao RU, Atkinson LJ, Vanderwall RP, Weil GJ. Brugia malayi: effects of gamma radiation on adult worms and their intracellular Wolbachia bacteria. Exp Parasitol. 2005 Feb;109(2):87-93. doi: 10.1016/j.exppara.2004.11.009. Epub 2005 Jan 7. PMID: 15687015.
Uhlmann EJ, Tebas P, Storch GA, Powderly WG, Lie YS, Whitcomb JM, Hellmann NS, Arens MQ. Effects of the G190A substitution of HIV reverse transcriptase on phenotypic susceptibility of patient isolates to delavirdine. J Clin Virol. 2004 Nov;31(3):198-203. doi: 10.1016/j.jcv.2004.03.012. PMID: 15465412.
Li BW, Rush AC, Tan J, Weil GJ. Quantitative analysis of gender-regulated transcripts in the filarial nematode Brugia malayi by real-time RT-PCR. Mol Biochem Parasitol. 2004 Oct;137(2):329-37. doi: 10.1016/j.molbiopara.2004.07.002. PMID: 15383303.
Mitreva M, Jasmer DP, Appleton J, Martin J, Dante M, Wylie T, Clifton SW, Waterston RH, McCarter JP. Gene discovery in the adenophorean nematode Trichinella spiralis: an analysis of transcription from three life cycle stages. Mol Biochem Parasitol. 2004 Oct;137(2):277-91. doi: 10.1016/j.molbiopara.2004.05.015. PMID: 15383298.
Mitreva M, Elling AA, Dante M, Kloek AP, Kalyanaraman A, Aluru S, Clifton SW, Bird DM, Baum TJ, McCarter JP. A survey of SL1-spliced transcripts from the root-lesion nematode Pratylenchus penetrans. Mol Genet Genomics. 2004 Sep;272(2):138-48. doi: 10.1007/s00438-004-1054-0. Epub 2004 Aug 28. PMID: 15338281.
Garbutt J, St Geme JW 3rd, May A, Storch GA, Shackelford PG. Developing community-specific recommendations for first-line treatment of acute otitis media: is high-dose amoxicillin necessary? Pediatrics. 2004 Aug;114(2):342-7. doi: 10.1542/peds.114.2.342. PMID: 15286214.
DeShields A, Borman-Shoap E, Peters JE, Gaudreault-Keener M, Arens MQ, Storch GA. Detection of pathogenic Ehrlichia in ticks collected at acquisition sites of human ehrlichiosis in Missouri. Mo Med. 2004 Mar-Apr;101(2):132-6. PMID: 15119113.
Mitreva M, McCarter JP, Martin J, Dante M, Wylie T, Chiapelli B, Pape D, Clifton SW, Nutman TB, Waterston RH. Comparative genomics of gene expression in the parasitic and free-living nematodes Strongyloides stercoralis and Caenorhabditis elegans. Genome Res. 2004 Feb;14(2):209-20. doi: 10.1101/gr.1524804. PMID: 14762059; PMCID: PMC327096.
Li BW, Rush A, Zhang SR, Curtis KC, Weil GJ. Antibody responses to Brugia malayi antigens induced by DNA vaccination. Filaria J. 2004 Jan 22;3(1):1. doi: 10.1186/1475-2883-3-1. PMID: 14738569; PMCID: PMC343290.
Wylie T, Martin JC, Dante M, Mitreva MD, Clifton SW, Chinwalla A, Waterston RH, Wilson RK, McCarter JP. Nematode.net: a tool for navigating sequences from parasitic and free-living nematodes. Nucleic Acids Res. 2004 Jan 1;32(Database issue):D423-6. doi: 10.1093/nar/gkh010. PMID: 14681448; PMCID: PMC308745.
Hardinger KL, Miller B, Storch GA, Desai NM, Brennan DC. West Nile virus- associated meningoencephalitis in two chronically immunosuppressed renal transplant recipients. Am J Transplant. 2003 Oct;3(10):1312-5. doi: 10.1046/j.1600-6143.2003.00223.x. PMID: 14510707.
Liddell AM, Stockham SL, Scott MA, Sumner JW, Paddock CD, Gaudreault-Keener M, Arens MQ, Storch GA. Predominance of Ehrlichia ewingii in Missouri dogs. J Clin Microbiol. 2003 Oct;41(10):4617-22. doi: 10.1128/jcm.41.10.4617-4622.2003. PMID: 14532192; PMCID: PMC254352.
Kruger RM, Paranjothi S, Storch GA, Lynch JP, Trulock EP. Impact of prophylaxis with cytogam alone on the incidence of CMV viremia in CMV- seropositive lung transplant recipients. J Heart Lung Transplant. 2003 Jul;22(7):754-63. doi: 10.1016/s1053-2498(02)00648-4. PMID: 12873543.
McCarter JP, Mitreva MD, Martin J, Dante M, Wylie T, Rao U, Pape D, Bowers Y, Theising B, Murphy CV, Kloek AP, Chiapelli BJ, Clifton SW, Bird DM, Waterston RH. Analysis and functional classification of transcripts from the nematode Meloidogyne incognita. Genome Biol. 2003;4(4):R26. doi: 10.1186/gb-2003-4-4-r26. Epub 2003 Mar 31. PMID: 12702207; PMCID: PMC154577.
Arens MQ, Liddell AM, Buening G, Gaudreault-Keener M, Sumner JW, Comer JA, Buller RS, Storch GA. Detection of Ehrlichia spp. in the blood of wild white- tailed deer in Missouri by PCR assay and serologic analysis. J Clin Microbiol. 2003 Mar;41(3):1263-5. doi: 10.1128/jcm.41.3.1263-1265.2003. PMID: 12624063; PMCID: PMC150261.
Liapis H, Storch GA, Hill DA, Rueda J, Brennan DC. CMV infection of the renal allograft is much more common than the pathology indicates: a retrospective analysis of qualitative and quantitative buffy coat CMV-PCR, renal biopsy pathology and tissue CMV-PCR. Nephrol Dial Transplant. 2003 Feb;18(2):397-402. doi: 10.1093/ndt/18.2.397. PMID: 12543898.
Storch GA. Rapid diagnostic tests for influenza. Curr Opin Pediatr. 2003 Feb;15(1):77-84. doi: 10.1097/00008480-200302000-00013. PMID: 12544276.
Lewis JS Jr, Khoury H, Storch GA, DiPersio J. PCR for the diagnosis of toxoplasmosis after hematopoietic stem cell transplantation. Expert Rev Mol Diagn. 2002 Nov;2(6):616-24. doi: 10.1586/14737159.2.6.616. PMID: 12465457.
Michalski ML, Monsey JD, Cistola DP, Weil GJ. An embryo-associated fatty acid-binding protein in the filarial nematode Brugia malayi. Mol Biochem Parasitol. 2002 Sep-Oct;124(1-2):1-10. doi: 10.1016/s0166-6851(02)00081-6. PMID: 12387845.
Sanchez JL, Storch GA. Multiplex, quantitative, real-time PCR assay for cytomegalovirus and human DNA. J Clin Microbiol. 2002 Jul;40(7):2381-6. doi: 10.1128/jcm.40.7.2381-2386.2002. PMID: 12089251; PMCID: PMC120584.
Liddell AM, Sumner JW, Paddock CD, Rikihisa Y, Unver A, Buller RS, Storch GA. Reinfection with Ehrlichia chaffeensis in a liver transplant recipient. Clin Infect Dis. 2002 Jun 15;34(12):1644-7. doi: 10.1086/340523. Epub 2002 May 16. PMID: 12032902.
Danziger-Isakov LA, Storch GA. Prevention and treatment of cytomegalovirus infections in solid organ transplant recipients. Pediatr Infect Dis J. 2002 May;21(5):432-4. doi: 10.1097/00006454-200205000-00019. PMID: 12150182.
Rao RU, Moussa H, Weil GJ. Brugia malayi: effects of antibacterial agents on larval viability and development in vitro. Exp Parasitol. 2002 May;101(1):77-81. doi: 10.1016/s0014-4894(02)00019-x. PMID: 12243742.
Storch GA. New developments in tick-borne infections. Pediatr Ann. 2002 Mar;31(3):200-4. doi: 10.3928/0090-4481-20020301-11. PMID: 11905294.
McConkey SJ, Youssef FG, Azem E, Frenck RW, Weil GJ. Evaluation of a rapid- format antibody test and the tuberculin skin test for diagnosis of tuberculosis in two contrasting endemic settings. Int J Tuberc Lung Dis. 2002 Mar;6(3):246-52. PMID: 11934143.
Sanchez JL, Kruger RM, Paranjothi S, Trulock EP, Lynch JP, Hicks C, Shannon WD, Storch GA. Relationship of cytomegalovirus viral load in blood to pneumonitis in lung transplant recipients. Transplantation. 2001 Aug 27;72(4):733-5. doi: 10.1097/00007890-200108270-00030. PMID: 11544440.
Reploeg MD, Storch GA, Clifford DB. Bk virus: a clinical review. Clin Infect Dis. 2001 Jul 15;33(2):191-202. doi: 10.1086/321813. Epub 2001 Jun 20. PMID: 11418879.
Johnson RM, Little JR, Storch GA. Kawasaki-like syndromes associated with human immunodeficiency virus infection. Clin Infect Dis. 2001 Jun 1;32(11):1628-34. doi: 10.1086/320523. Epub 2001 May 4. PMID: 11340536.
Young PP, Buller RS, Storch GA. Evaluation of a commercial DNA enzyme immunoassay for detection of enterovirus reverse transcription-PCR products amplified from cerebrospinal fluid specimens. J Clin Microbiol. 2000 Nov;38(11):4260-1. doi: 10.1128/JCM.38.11.4260-4261.2000. PMID: 11060104; PMCID: PMC87577.
Storch GA. Diagnostic virology. Clin Infect Dis. 2000 Sep;31(3):739-51. doi: 10.1086/314015. Epub 2000 Oct 4. PMID: 11017824.
Wong M, Schlaggar BL, Buller RS, Storch GA, Landt M. Cerebrospinal fluid protein concentration in pediatric patients: defining clinically relevant reference values. Arch Pediatr Adolesc Med. 2000 Aug;154(8):827-31. doi: 10.1001/archpedi.154.8.827. PMID: 10922281.
Zhang S, Li BW, Weil GJ. Paper chromatography hybridization: a rapid method for detection of Onchocerca volvulus DNA amplified by PCR. Am J Trop Med Hyg. 2000 Jul-Aug;63(1-2):85-9. doi: 10.4269/ajtmh.2000.63.85. PMID: 11358002.
Leonard JR, Moran CJ, Cross DT 3rd, Wippold FJ 2nd, Schlesinger Y, Storch GA. MR imaging of herpes simplex type 1 encephalitis in infants and young children: a separate pattern of findings. AJR Am J Roentgenol. 2000 Jun;174(6):1651-5. doi: 10.2214/ajr.174.6.1741651. PMID: 10845501.
Brennan DC, Storch GA, Singer GG, Lee L, Rueda J, Schnitzler MA. The prevalence of human herpesvirus-7 in renal transplant recipients is unaffected by oral or intravenous ganciclovir. J Infect Dis. 2000 May;181(5):1557-61. doi: 10.1086/315477. Epub 2000 May 8. PMID: 10823753.
Vincent JA, Lustigman S, Zhang S, Weil GJ. A comparison of newer tests for the diagnosis of onchocerciasis. Ann Trop Med Parasitol. 2000 Apr;94(3):253-8. doi: 10.1080/00034980050006438. PMID: 10884870.
Kruger RM, Shannon WD, Arens MQ, Lynch JP, Storch GA, Trulock EP. The impact of ganciclovir-resistant cytomegalovirus infection after lung transplantation. Transplantation. 1999 Nov 15;68(9):1272-9. doi: 10.1097/00007890-199911150-00010. PMID: 10573063.
Michalski ML, Weil GJ. Gender-specific gene expression in Brugia malayi. Mol Biochem Parasitol. 1999 Nov 30;104(2):247-57. doi: 10.1016/s0166-6851(99)00149-8. PMID: 10593179.
Li BW, Zhang S, Curtis KC, Weil GJ. Immune responses to Brugia malayi paramyosin in rodents after DNA vaccination. Vaccine. 1999 Aug 20;18(1-2):76-81. doi: 10.1016/s0264-410x(99)00182-6. PMID: 10501237.
Weil GJ, Ramzy RM, El Setouhy M, Kandil AM, Ahmed ES, Faris R. A longitudinal study of Bancroftian filariasis in the Nile Delta of Egypt: baseline data and one-year follow-up. Am J Trop Med Hyg. 1999 Jul;61(1):53-8. doi: 10.4269/ajtmh.1999.61.53. PMID: 10432056.
Buller RS, Arens M, Hmiel SP, Paddock CD, Sumner JW, Rikhisa Y, Unver A, Gaudreault-Keener M, Manian FA, Liddell AM, Schmulewitz N, Storch GA. Ehrlichia ewingii, a newly recognized agent of human ehrlichiosis. N Engl J Med. 1999 Jul 15;341(3):148-55. doi: 10.1056/NEJM199907153410303. PMID: 10403852.
Pomeranz HD, Storch GA, Lueder GT. Pediatric meningococcal conjunctivitis. J Pediatr Ophthalmol Strabismus. 1999 May-Jun;36(3):161-3. PMID: 10358823.
Zhang S, Li B, Weil GJ. Human antibody responses to Brugia malayi antigens in brugian filariasis. Int J Parasitol. 1999 Mar;29(3):429-36. doi: 10.1016/s0020-7519(98)00225-2. PMID: 10333326.
Tebas P, Nease RF, Storch GA. Use of the polymerase chain reaction in the diagnosis of herpes simplex encephalitis: a decision analysis model. Am J Med. 1998 Oct;105(4):287-95. doi: 10.1016/s0002-9343(98)00259-9. PMID: 9809689.
Storch GA. Humanized monoclonal antibody for prevention of respiratory syncytial virus infection. Pediatrics. 1998 Sep;102(3 Pt 1):648-51. doi: 10.1542/peds.102.3.648. PMID: 9738192.
Roberts TC, Brennan DC, Buller RS, Gaudreault-Keener M, Schnitzler MA, Sternhell KE, Garlock KA, Singer GG, Storch GA. Quantitative polymerase chain reaction to predict occurrence of symptomatic cytomegalovirus infection and assess response to ganciclovir therapy in renal transplant recipients. J Infect Dis. 1998 Sep;178(3):626-35. doi: 10.1086/515383. PMID: 9728529.
Chandrashekar R, Curtis KC, Lu W, Weil GJ. Molecular cloning of an enzymatically active thioredoxin peroxidase from Onchocerca volvulus. Mol Biochem Parasitol. 1998 Jun 1;93(2):309-12. doi: 10.1016/s0166-6851(98)00041-3. PMID: 9662714.
Brennan DC, Garlock KA, Singer GG, Schnitzler MA, Lippmann BJ, Buller RS, Gaudreault-Keener M, Lowell JA, Shenoy S, Howard TK, Storch GA. Prophylactic oral ganciclovir compared with deferred therapy for control of cytomegalovirus in renal transplant recipients. Transplantation. 1997 Dec 27;64(12):1843-6. doi: 10.1097/00007890-199712270-00036. PMID: 9422429.
Weil GJ, Lammie PJ, Weiss N. The ICT Filariasis Test: A rapid-format antigen test for diagnosis of bancroftian filariasis. Parasitol Today. 1997 Oct;13(10):401-4. doi: 10.1016/s0169-4758(97)01130-7. PMID: 15275155.
Roberts TC, Buller RS, Gaudreault-Keener M, Sternhell KE, Garlock K, Singer GG, Brennan DC, Storch GA. Effects of storage temperature and time on qualitative and quantitative detection of cytomegalovirus in blood specimens by shell vial culture and PCR. J Clin Microbiol. 1997 Sep;35(9):2224-8. doi: 10.1128/JCM.35.9.2224-2228.1997. PMID: 9276392; PMCID: PMC229944.
Kaltwasser G, Diego J, Welby-Sellenriek PL, Ferrett R, Caparon M, Storch GA. Polymerase chain reaction for Streptococcus pyogenes used to evaluate an optical immunoassay for the detection of group A streptococci in children with pharyngitis. Pediatr Infect Dis J. 1997 Aug;16(8):748-53. doi: 10.1097/00006454-199708000-00004. PMID: 9271035.
Welby-Sellenriek PL, Keller DS, Ferrett RJ, Storch GA. Comparison of the BacT/Alert FAN aerobic and the Difco ESP 80A aerobic bottles for pediatric blood cultures. J Clin Microbiol. 1997 May;35(5):1166-71. doi: 10.1128/JCM.35.5.1166-1171.1997. PMID: 9114401; PMCID: PMC232723.
Chuck RS, Olk RJ, Weil GJ, Akduman L, Benenson IL, Smith ME, Kaplan HJ. Surgical removal of a subretinal proliferating cysticercus of taeniaeformis crassiceps. Arch Ophthalmol. 1997 Apr;115(4):562-3. doi: 10.1001/archopht.1997.01100150564028. PMID: 9109776.
Brennan DC, Garlock KA, Lippmann BJ, Buller RS, Gaudreault-Keener M, Lowell JA, Miller SB, Shenoy S, Howard TK, Storch GA. Polymerase chain reaction- triggered preemptive or deferred therapy to control cytomegalovirus-associated morbidity and costs in renal transplant patients. Transplant Proc. 1997 Feb- Mar;29(1-2):809-11. doi: 10.1016/s0041-1345(96)00143-1. PMID: 9123536.
Roberts TC, Storch GA. Multiplex PCR for diagnosis of AIDS-related central nervous system lymphoma and toxoplasmosis. J Clin Microbiol. 1997 Jan;35(1):268-9. doi: 10.1128/JCM.35.1.268-269.1997. PMID: 8968922; PMCID: PMC229553.
Brennan DC, Garlock KA, Lippmann BA, Buller RS, Gaudreault-Keener M, Lowell JA, Miller SB, Shenoy S, Howard TK, Storch GA. Control of cytomegalovirus- associated morbidity in renal transplant patients using intensive monitoring and either preemptive or deferred therapy. J Am Soc Nephrol. 1997 Jan;8(1):118-25. PMID: 9013456.
Clifford DB, Arribas JR, Storch GA, Tourtellote W, Wippold FJ. Magnetic resonance brain imaging lacks sensitivity for AIDS associated cytomegalovirus encephalitis. J Neurovirol. 1996 Dec;2(6):397-403. doi: 10.3109/13550289609146905. PMID: 8972421.
Chandrashekar R, Ogunrinade AF, Weil GJ. Use of recombinant Onchocerca volvulus antigens for diagnosis and surveillance of human onchocerciasis. Trop Med Int Health. 1996 Oct;1(5):575-80. doi: 10.1111/j.1365-3156.1996.tb00082.x. PMID: 8911441.
Arribas JR, Storch GA, Clifford DB, Tselis AC. Cytomegalovirus encephalitis. Ann Intern Med. 1996 Oct 1;125(7):577-87. doi: 10.7326/0003-4819-125-7-199610010-00008. PMID: 8815757.
Weil GJ, Ramzy RM, Chandrashekar R, Gad AM, Lowrie RC Jr, Faris R. Parasite antigenemia without microfilaremia in bancroftian filariasis. Am J Trop Med Hyg. 1996 Sep;55(3):333-7. doi: 10.4269/ajtmh.1996.55.333. PMID: 8842125.
Kenagy DN, Schlesinger Y, Weck K, Ritter JH, Gaudreault-Keener MM, Storch GA. Epstein-Barr virus DNA in peripheral blood leukocytes of patients with posttransplant lymphoproliferative disease. Transplantation. 1995 Sep 27;60(6):547-54. doi: 10.1097/00007890-199509270-00005. PMID: 7570949.
Chandrashekar R, Van Swinderen B, Taylor HR, Weil GJ. Effect of ivermectin prophylaxis on antibody responses to Onchocerca volvulus recombinant antigens in experimentally infected chimpanzees. Int J Parasitol. 1995 Aug;25(8):983-8. doi: 10.1016/0020-7519(95)00011-p. PMID: 8550298.
Arribas JR, Clifford DB, Fichtenbaum CJ, Commins DL, Powderly WG, Storch GA. Level of cytomegalovirus (CMV) DNA in cerebrospinal fluid of subjects with AIDS and CMV infection of the central nervous system. J Infect Dis. 1995 Aug;172(2):527-31. doi: 10.1093/infdis/172.2.527. PMID: 7622897.
Chandrashekar R, Curtis KC, Li BW, Weil GJ. Molecular characterization of a Brugia malayi intermediate filament protein which is an excretory-secretory product of adult worms. Mol Biochem Parasitol. 1995 Jul;73(1-2):231-9. doi: 10.1016/0166-6851(95)00122-h. PMID: 8577331.
Chandrashekar R, Curtis KC, Weil GJ. Molecular characterization of a parasite antigen in sera from onchocerciasis patients that is immunologically cross-reactive with human keratin. J Infect Dis. 1995 Jun;171(6):1586-92. doi: 10.1093/infdis/171.6.1586. PMID: 7539474.
Arribas JR, Clifford DB, Fichtenbaum CJ, Roberts RL, Powderly WG, Storch GA. Detection of Epstein-Barr virus DNA in cerebrospinal fluid for diagnosis of AIDS-related central nervous system lymphoma. J Clin Microbiol. 1995 Jun;33(6):1580-3. doi: 10.1128/JCM.33.6.1580-1583.1995. PMID: 7650190; PMCID: PMC228219.
Buller RS, Gaudreault-Keener M, Rossiter-Fornoff J, Storch GA. Direct quantitative comparison of shell vial and conventional culture for detection of CMV viremia. Clin Diagn Virol. 1995 May;3(4):317-22. doi: 10.1016/0928-0197(94)00048-y. PMID: 15566812.
Welby PL, Keller DS, Storch GA. Comparison of automated Difco ESP blood culture system with biphasic BBL Septi-Chek system for detection of bloodstream infections in pediatric patients. J Clin Microbiol. 1995 May;33(5):1084-8. doi: 10.1128/JCM.33.5.1084-1088.1995. PMID: 7615710; PMCID: PMC228109.
Li BW, Hoppe PE, Weil GJ. Cloning of an early immunodominant filarial antigen: a member of the Brugia malayi myosin heavy chain gene family. Int J Parasitol. 1995 May;25(5):611-9. doi: 10.1016/0020-7519(94)00164-j. PMID: 7635639.
Bailey TC, Buller RS, Ettinger NA, Trulock EP, Gaudreault-Keener M, Langlois TM, Fornoff JE, Cooper JD, Storch GA. Quantitative analysis of cytomegalovirus viremia in lung transplant recipients. J Infect Dis. 1995 Apr;171(4):1006-10. doi: 10.1093/infdis/171.4.1006. PMID: 7706777.
Schlesinger Y, Tebas P, Gaudreault-Keener M, Buller RS, Storch GA. Herpes simplex virus type 2 meningitis in the absence of genital lesions: improved recognition with use of the polymerase chain reaction. Clin Infect Dis. 1995 Apr;20(4):842-8. doi: 10.1093/clinids/20.4.842. PMID: 7795083.
Schlesinger Y, Buller RS, Brunstrom JE, Moran CJ, Storch GA. Expanded spectrum of herpes simplex encephalitis in childhood. J Pediatr. 1995 Feb;126(2):234-41. doi: 10.1016/s0022-3476(95)70550-3. PMID: 7844669.
Storch GA, Gaudreault-Keener M, Welby PC. Comparison of heparin and EDTA transport tubes for detection of cytomegalovirus in leukocytes by shell vial assay, pp65 antigenemia assay, and PCR. J Clin Microbiol. 1994 Oct;32(10):2581-3. doi: 10.1128/JCM.32.10.2581-2583.1994. PMID: 7814504; PMCID: PMC264108.
Schlesinger Y, Sawyer MH, Storch GA. Enteroviral meningitis in infancy: potential role for polymerase chain reaction in patient management. Pediatrics. 1994 Aug;94(2 Pt 1):157-62. PMID: 8036066.
Lee SF, Buller R, Chansue E, Hanika WC, Brunt EM, Aquino T, Storch GA, Pepose JS. Vaccinia keratouveitis manifesting as a masquerade syndrome. Am J Ophthalmol. 1994 Apr 15;117(4):480-7. doi: 10.1016/s0002-9394(14)70008-x. PMID: 8154530.
Storch GA, Buller RS, Bailey TC, Ettinger NA, Langlois T, Gaudreault-Keener M, Welby PL. Comparison of PCR and pp65 antigenemia assay with quantitative shell vial culture for detection of cytomegalovirus in blood leukocytes from solid-organ transplant recipients. J Clin Microbiol. 1994 Apr;32(4):997-1003. doi: 10.1128/JCM.32.4.997-1003.1994. PMID: 8027357; PMCID: PMC267169.
Welby PL, Keller DS, Cromien JL, Tebas P, Storch GA. Resistance to penicillin and non-beta-lactam antibiotics of Streptococcus pneumoniae at a children’s hospital. Pediatr Infect Dis J. 1994 Apr;13(4):281-7. doi: 10.1097/00006454-199404000-00007. PMID: 8036044.
Chandrashekar R, Curtis KC, Ramzy RM, Liftis F, Li BW, Weil GJ. Molecular cloning of Brugia malayi antigens for diagnosis of lymphatic filariasis. Mol Biochem Parasitol. 1994 Apr;64(2):261-71. doi: 10.1016/0166-6851(94)00035-2. PMID: 7935604.
Schlesinger Y, Storch GA. Herpes simplex meningitis in infancy. Pediatr Infect Dis J. 1994 Feb;13(2):141-4. doi: 10.1097/00006454-199402000-00012. PMID: 8190540.
Storch GA, Ettinger NA, Ockner D, Wick MR, Gaudreault-Keener M, Rossiter J, Trulock EP, Cooper JD. Quantitative cultures of the cell fraction and supernatant of bronchoalveolar lavage fluid for the diagnosis of cytomegalovirus pneumonitis in lung transplant recipients. J Infect Dis. 1993 Dec;168(6):1502-6. doi: 10.1093/infdis/168.6.1502. PMID: 8245535.
Stabell EC, O’Rourke SR, Storch GA, Olivo PD. Evaluation of a genetically engineered cell line and a histochemical beta-galactosidase assay to detect herpes simplex virus in clinical specimens. J Clin Microbiol. 1993 Oct;31(10):2796-8. doi: 10.1128/JCM.31.10.2796-2798.1993. PMID: 8253988; PMCID: PMC266019.
Fichtenbaum CJ, Peterson LR, Weil GJ. Ehrlichiosis presenting as a life- threatening illness with features of the toxic shock syndrome. Am J Med. 1993 Oct;95(4):351-7. doi: 10.1016/0002-9343(93)90302-6. PMID: 8213865.
Bailey TC, Ettinger NA, Storch GA, Trulock EP, Hanto DW, Dunagan WC, Jendrisak MD, McCullough CS, Kenzora JL, Powderly WG. Failure of high-dose oral acyclovir with or without immune globulin to prevent primary cytomegalovirus disease in recipients of solid organ transplants. Am J Med. 1993 Sep;95(3):273-8. doi: 10.1016/0002-9343(93)90279-x. PMID: 8396320.
Chandrashekar R, Ogunrinade AF, Henry RW, Lustigman S, Weil GJ. Onchocerca volvulus: monoclonal antibodies to immune complex-associated parasite antigens. Exp Parasitol. 1993 Sep;77(2):224-34. doi: 10.1006/expr.1993.1079. PMID: 7690712.
Ettinger NA, Bailey TC, Trulock EP, Storch GA, Anderson D, Raab S, Spitznagel EL, Dresler C, Cooper JD. Cytomegalovirus infection and pneumonitis. Impact after isolated lung transplantation. Washington University Lung Transplant Group. Am Rev Respir Dis. 1993 Apr;147(4):1017-23. doi: 10.1164/ajrccm/147.4.1017. PMID: 8385429.
Li BW, Chandrashekar R, Weil GJ. Vaccination with recombinant filarial paramyosin induces partial immunity to Brugia malayi infection in jirds. J Immunol. 1993 Mar 1;150(5):1881-5. PMID: 8436822.
Storch GA, Hall CB, Anderson LJ, Park CS, Dohner DE. Antigenic and nucleic acid analysis of nosocomial isolates of respiratory syncytial virus. J Infect Dis. 1993 Mar;167(3):562-6. doi: 10.1093/infdis/167.3.562. PMID: 8440927.
Bailey TC, Powderly WG, Storch GA, Miller SB, Dunkel JD, Woodward RS, Spitznagel E, Hanto DW, Dunagan WC. Symptomatic cytomegalovirus infection in renal transplant recipients given either Minnesota antilymphoblast globulin (MALG) or OKT3 for rejection prophylaxis. Am J Kidney Dis. 1993 Feb;21(2):196-201. doi: 10.1016/s0272-6386(12)81093-6. PMID: 8381577.
Clifford DB, Buller RS, Mohammed S, Robison L, Storch GA. Use of polymerase chain reaction to demonstrate cytomegalovirus DNA in CSF of patients with human immunodeficiency virus infection. Neurology. 1993 Jan;43(1):75-9. doi: 10.1212/wnl.43.1_part_1.75. PMID: 8380909.
McNearney T, Hornickova Z, Kloster B, Birdwell A, Storch GA, Polmar SH, Arens M, Ratner L. Evolution of sequence divergence among human immunodeficiency virus type 1 isolates derived from a blood donor and a recipient. Pediatr Res. 1993 Jan;33(1):36-42. doi: 10.1203/00006450-199301000-00008. PMID: 8433858.
Buller RS, Bailey TC, Ettinger NA, Keener M, Langlois T, Miller JP, Storch GA. Use of a modified shell vial technique to quantitate cytomegalovirus viremia in a population of solid-organ transplant recipients. J Clin Microbiol. 1992 Oct;30(10):2620-4. doi: 10.1128/JCM.30.10.2620-2624.1992. PMID: 1328280; PMCID: PMC270488.
Welby PL, Zusag TM, Storch GA. Comparison of the Bactec Peds Plus pediatric blood culture vial with Roche pediatric Septi-Chek for blood cultures from pediatric patients. J Clin Microbiol. 1992 May;30(5):1361-2. doi: 10.1128/JCM.30.5.1361-1362.1992. PMID: 1583151; PMCID: PMC265288.
Weil GJ, Li BW, Liftis F, Chandrashekar R. Brugia malayi: antibody responses to larval antigens in infected and immunized jirds. Exp Parasitol. 1992 May;74(3):315-23. doi: 10.1016/0014-4894(92)90155-4. PMID: 1582484.
Welby PL, Zusag TM, Orlando MF, Storch GA. Evaluation of the pediatric Septi-Chek blood culture system. Diagn Microbiol Infect Dis. 1992 May- Jun;15(4):301-6. doi: 10.1016/0732-8893(92)90015-l. PMID: 1611846.
Bailey TC, Trulock EP, Ettinger NA, Storch GA, Cooper JD, Powderly WG. Failure of prophylactic ganciclovir to prevent cytomegalovirus disease in recipients of lung transplants. J Infect Dis. 1992 Mar;165(3):548-52. doi: 10.1093/infdis/165.3.548. PMID: 1311352.
Li BW, Chandrashekar R, Alvarez RM, Liftis F, Weil GJ. Identification of paramyosin as a potential protective antigen against Brugia malayi infection in jirds. Mol Biochem Parasitol. 1991 Dec;49(2):315-23. doi: 10.1016/0166-6851(91)90075-h. PMID: 1775173.
Weil GJ, Lammie PJ, Richards FO Jr, Eberhard ML. Changes in circulating parasite antigen levels after treatment of bancroftian filariasis with diethylcarbamazine and ivermectin. J Infect Dis. 1991 Oct;164(4):814-6. doi: 10.1093/infdis/164.4.814. PMID: 1894943.
Chandrashekar R, Subrahmanyam D, Weil GJ. Effect of CGP 20376 on Brugia malayi and parasite antigenemia in jirds. J Parasitol. 1991 Jun;77(3):479-82. PMID: 2040959.
Storch GA, Anderson LJ, Park CS, Tsou C, Dohner DE. Antigenic and genomic diversity within group A respiratory syncytial virus. J Infect Dis. 1991 Apr;163(4):858-61. doi: 10.1093/infdis/163.4.858. PMID: 2010638.
Arens M, Owen J, Hagerty CM, Reed CA, Storch GA. Optimizing recovery of cytomegalovirus in the shell vial culture procedure. Diagn Microbiol Infect Dis. 1991 Mar-Apr;14(2):125-30. doi: 10.1016/0732-8893(91)90046-i. PMID: 1651824.
Chandrashekar R, Ogunrinade AF, Alvarez RM, Kale OO, Weil GJ. Circulating immune complex-associated parasite antigens in human onchocerciasis. J Infect Dis. 1990 Nov;162(5):1159-64. doi: 10.1093/infdis/162.5.1159. PMID: 2230240.
Weil GJ. Parasite antigenemia in lymphatic filariasis. Exp Parasitol. 1990 Oct;71(3):353-6. doi: 10.1016/0014-4894(90)90042-b. PMID: 2209794.
Marsano L, Perrillo RP, Flye MW, Hanto DW, Spitzer ED, Thomas JR, Murray PR, Windus DW, Brunt EM, Storch GA. Comparison of culture and serology for the diagnosis of cytomegalovirus infection in kidney and liver transplant recipients. J Infect Dis. 1990 Mar;161(3):454-61. doi: 10.1093/infdis/161.3.454. PMID: 2155974.
Weil GJ, Ogunrinade AF, Chandrashekar R, Kale OO. IgG4 subclass antibody serology for onchocerciasis. J Infect Dis. 1990 Mar;161(3):549-54. doi: 10.1093/infdis/161.3.549. PMID: 2179425.
Weil GJ, Chandrashekar R, Liftis F, McVay CS, Bosshardt SC, Klei TR. Circulating parasite antigen in Brugia pahangi-infected jirds. J Parasitol. 1990 Feb;76(1):78-84. PMID: 2405144.
Chandrashekar R, Yates JA, Weil GJ. Use of parasite antigen detection to monitor macrofilaricidal therapy in Brugia malayi-infected jirds. J Parasitol. 1990 Feb;76(1):122-4. PMID: 2405143.
Lee SF, Storch GA, Reed CA, Hagerty CM, Pepose JS. Comparative laboratory diagnosis of experimental herpes simplex keratitis. Am J Ophthalmol. 1990 Jan 15;109(1):8-12. doi: 10.1016/s0002-9394(14)75570-9. PMID: 2153342.
Storch GA, Park CS, Dohner DE. RNA fingerprinting of respiratory syncytial virus using ribonuclease protection. Application to molecular epidemiology. J Clin Invest. 1989 Jun;83(6):1894-902. doi: 10.1172/JCI114096. PMID: 2723064; PMCID: PMC303910.
Himmelreich CA, Orlando MF, Storch GA. Comparison of the Oxoid Signal blood culture system with supplemented peptone broth in a pediatric hospital. J Clin Microbiol. 1989 Jun;27(6):1262-5. doi: 10.1128/JCM.27.6.1262-1265.1989. PMID: 2787805; PMCID: PMC267538.
Alvarez RM, Henry RW, Weil GJ. Use of Iodogen and sulfosuccinimidobiotin to identify and isolate cuticular proteins of the filarial parasite Brugia malayi. Mol Biochem Parasitol. 1989 Mar 1;33(2):183-9. doi: 10.1016/0166-6851(89)90032-7. PMID: 2725583.
Weil GJ. Brugia malayi: detection of parasite antigen in sera from infected jirds. Exp Parasitol. 1988 Oct;67(1):54-62. doi: 10.1016/0014-4894(88)90008-2. PMID: 3049135.
Lenoir AA, Storch GA, DeSchryver-Kecskemeti K, Shackelford GD, Rothbaum RJ, Wear DJ, Rosenblum JL. Granulomatous hepatitis associated with cat scratch disease. Lancet. 1988 May 21;1(8595):1132-6. doi: 10.1016/s0140-6736(88)91952-6. PMID: 2896959.
Weil GJ, Sethumadhavan KV, Santhanam S, Jain DC, Ghosh TK. Persistence of parasite antigenemia following diethylcarbamazine therapy of bancroftian filariasis. Am J Trop Med Hyg. 1988 May;38(3):589-95. doi: 10.4269/ajtmh.1988.38.589. PMID: 3079315.
Storch GA, Reed CA, Dalu ZA. Evaluation of a latex agglutination test for herpes simplex virus. J Clin Microbiol. 1988 Apr;26(4):787-8. doi: 10.1128/JCM.26.4.787-788.1988. PMID: 2835394; PMCID: PMC266451.
Cromien JL, Himmelreich CA, Glass RI, Storch GA. Evaluation of new commercial enzyme immunoassay for rotavirus detection. J Clin Microbiol. 1987 Dec;25(12):2359-62. doi: 10.1128/JCM.25.12.2359-2362.1987. PMID: 2828415; PMCID: PMC269488.
Weil GJ. Dirofilaria immitis: identification and partial characterization of parasite antigens in the serum of infected dogs. Exp Parasitol. 1987 Oct;64(2):244-51. doi: 10.1016/0014-4894(87)90149-4. PMID: 3308507.
Storch GA, Gruber C, Benz B, Beaudoin J, Hayes J. A rubella outbreak among dental students: description of the outbreak and analysis of control measures. Infect Control. 1985 Apr;6(4):150-6. doi: 10.1017/s0195941700062950. PMID: 3845926.
Martin J, Tyagi R, Rosa BA, Mitreva M. A Multi-Omics Database for Parasitic Nematodes and Trematodes. Methods Mol Biol. 2018;1757:371-397. doi: 10.1007/978-1-4939-7737-6_13. PMID: 29761465; PMCID: PMC6314195.
Zamora RL, del Priore LV, Storch GA, Gelb LD, Sharp J. Multiple recurrent branch retinal artery occlusions associated with varicella zoster virus. Retina. 1996;16(5):399-404. doi: 10.1097/00006982-199616050-00006. PMID: 8912966.
Grand MG, Storch GA. Presumed parvovirus B19-associated retinal pigment epitheliopathy. Retina. 2000;20(2):199-202. PMID: 10783955.
Clifton SW, Mitreva M. Strategies for undertaking expressed sequence tag (EST) projects. Methods Mol Biol. 2009;533:13-32. doi: 10.1007/978-1-60327-136-3_2. PMID: 19277564.
Pickens DL, Schefft GL, Storch GA, Thach BT. Characterization of prolonged apneic episodes associated with respiratory syncytial virus infection. Pediatr Pulmonol. 1989;6(3):195-201. doi: 10.1002/ppul.1950060314. PMID: 2717245.
Mitreva M, Smant G, Helder J. Role of horizontal gene transfer in the evolution of plant parasitism among nematodes. Methods Mol Biol. 2009;532:517-35. doi: 10.1007/978-1-60327-853-9_30. PMID: 19271205.
Ahn CK, Holt NJ, Tarr PI. Shiga-toxin producing Escherichia coli and the hemolytic uremic syndrome: what have we learned in the past 25 years? Adv Exp Med Biol. 2009;634:1-17. doi: 10.1007/978-0-387-79838-7_1. PMID: 19280844.
Mitreva M, Mardis ER. Large-scale sequencing and analytical processing of ESTs. Methods Mol Biol. 2009;533:153-87. doi: 10.1007/978-1-60327-136-3_8. PMID: 19277558.
Mitreva M, Wendl MC, Martin J, Wylie T, Yin Y, Larson A, Parkinson J, Waterston RH, McCarter JP. Codon usage patterns in Nematoda: analysis based on over 25 million codons in thirty-two species. Genome Biol. 2006;7(8):R75. doi: 10.1186/gb-2006-7-8-r75. PMID: 26271136; PMCID: PMC1779591.