Mueller, T.J., Welsh, E.A., Pakrasi, H.B., and Maranas, C.D. 2015 “Identifying Regulatory Changes to Facilitate Nitrogen Fixation in the Nondiazotroph Synechocystis sp. PCC 6803” ACS Synth. Biol. | DOI: 10.1021/acssynbio.5b00202
Berla, Bertram M., Saha, Rajib, Maranas, Costas D. & Pakrasi, Himadri B. 2015 “Cyanobacterial Alkanes Modulate Photosynthetic Cyclic Electron Flow to Assist Growth under Cold Stress” Scientific Reports | 5:14894 | DOI: 10.1038/srep14894
Ng, Andrew H, Berla, Bertram, Pakrasi, Himadri B. 2015 “Fine-Tuning of Photoautotrophic Protein Production by Combining Promoters and Neutral Sites in the Cyanobacterium Synechocystis sp. Strain PCC 6803″ AEM 81:19.
Liu, H., Weisz, D.A., Pakrasi, H.B. 2015 “Multiple copies of the PsbQ protein in a cyanobacterial photosystem II assembly intermediate complex” Photosynth Res. | PMID:25800517 | DOI 10.1007/s11120-015-0123-z.
Yu, J., Liberton, M., Cliften, P. F., Head, R. D., Jacobs, J. M., Smith, R. D., Koppenaal, D. W., Brand, J. J. and Pakrasi, H. B. 2015 “Synechococcus elongatus UTEX 2973, a fast growing cyanobacterial chassis for biosynthesis using light and CO2.” Scientific Rep., 5 : 8132 | DOI: 10.1038/srep08132.
Aryal, U. K., Callister, S. J., McMahon, B., McCue, L. A., Brown, J., Stöckel, J., Liberton, M., Mishra, S., Zhang, X., Nicora, C. D., Angel, T., Koppenaal, D. W., Smith, R. D., Pakrasi, H. B. and Sherman, L. A. 2014″Proteomic profiles of five strains of oxygenic photosynthetic cyanobacteria of the genus Cyanothece.” J. Proteome Res., 13: 3262-3276.
Wegener, K. M., Nagarajan, A. and Pakrasi, H. B. 2014 “An atypical psbA gene encodes a sentinel D1 protein to form a physiologically relevant inactive PSII complex in cyanobacteria.” J. Biol. Chem., jbc.M114.604124.
Nagarajan, A.; Page, L.E.; Liberton, M.; Pakrasi, H.B. “Consequences of Decreased Light Harvesting Capability on Photosystem II Function inSynechocystis sp. PCC 6803.” Life 2014, 4, 903-914.
Guo J, Nguyen AY, Dai Z, Su D, Gaffrey MJ, Moore RJ, Jacobs JM, Monroe ME, Smith RD, Koppenaal DW, Pakrasi HB, Qian WJ “Proteome-wide Light/Dark Modulation of Thiol Oxidation in Cyanobacteria Revealed by Quantitative Site-Specific Redox Proteomics” Mol Cell Proteomics 2014 Dec 13(12):3270-85 doi: 10.1074/mcp.M114.041160.
You L, Berla B, He L, Pakrasi HB and Tang YJ “13C-MFA delineates the photomixotrophic metabolism of Synechocystis sp. PCC 6803 under light- and carbon-sufficient conditions.” Biotechnol J, 2014 May 9(5):684-92 doi: 10.1002/biot.201300477.
Liu H, Zhang H, Weisz DA, Vidavsky I, Gross ML, Pakrasi HB “MS-based cross-linking analysis reveals the location of the PsbQ protein in cyanobacterial photosystem II” PNAS 2014 111(12): 4638-43.
Liberton M, Collins AM, Page LE, O’Dell WE, O’Neill H, Urban VS, Timlin JA and Pakrasi HB (2013) “Probing the consequences of antenna modification in cyanobacteria” Photosynth Res 118: 17-24.
Mueller TJ, Berla BM, Pakrasi HB and Maranas CD (2013) “Rapid construction of metabolic models for a family of Cyanobacteria using a multiple source annotation workflow” BMC Systems Biology 7(1): 142.
Krishnakumar S, Gaudana SB, Viswanathan GA, Pakrasi HB and Wangikar PP (2013) Rhythm of carbon and nitrogen fixation in unicellular cyanobacteria under turbulent and highly aerobic conditions.Biotechnology and Bioengineering, 110: 2371-2379.
Berla BM, Saha R, Immethun CM, Moon TS, Maranas CD, Pakrasi HB (2013) “Synthetic Biology of Cyanobacteria: Unique Challenges and Opportunities” Frontiers in Microbiology 4:246 doi: 10.3389/fmicb.2013.00246
Liu H, Chen J, Huang RYC, Weisz D, Gross ML, Pakrasi HB (2013) “Mass spectrometry-based footprinting reveals structural dynamics of loop E of the chlorophyll-binding protein CP43 during photosystem II assembly” Frontiers in Microbiology 4:246 doi: 10.3389/fmicb.2013.00246
Landry BP, Stockel J, Pakrasi HB (2013) “Use of degradation tags to control protein levels in the cyanobacterium Synechocystis sp. PCC 6803″ Appl Envinron Microbiol 79(8): 2833-5.
Stockel J, Elvitigala T, Liberton M, Pakrasi HB (2013) “Carbon availability affects diurnally controlled processes and cell morphology of Cyanothece 51142″ PLoS ONE ; 8(2):e56887.
Bandyopadhyay A, Elvitigala T, Liberton M, Pakrasi HB (2013) “Variations in the Rhythms of Respiration and Nitrogen Fixation in Members of the Unicellular Diazotrophic Cyanobacterial Genus Cyanothece” Plant Physiology Epub ahead of print, 2012DEC28.
Musgrave WB, Yi H, Kline D, Cameron JC, Wignes J, Dey S, Pakrasi HB, Jez JM (2013) “Probing the origins of glutathione biosynthesis through biochemical analysis of glutamate-cysteine ligase and glutathione synthetase from a model photosynthetic prokaryote” Biochem J doi: 10.1042/BJ20121332.
Memon D, Singh AK, Pakrasi HB, Wangikar PP (2013) “A global analysis of adaptive evolution of operons in cyanobacteria” Antonie van Leeuwenhoek doi:10.1007/s10482-012-9813-0.
Liberton M, Page LE, O’Dell WB, O’Neill H, Mamontov E, Urban VS, Pakrasi HB (2013) “Organization and flexibility of cyanobacterial thylakoid membranes examined by neutron scattering” J Biol Chem doi: 10.1074/jbc.M112.416933.
Page L, Liberton M, Pakrasi HB (2012) “Reduction of photoautotrophic productivity in the cyanobacterium Synechocystis sp. strain PCC 6803 by phycobilisome antenna truncation” Appl Environ Microbio doi: 10.1128/AEM.00499-12.
Varman AM, Xiao Y, Pakrasi HB, Tang YJ (2012) “Metabolic Engineering of Synechocystis sp. Strain PCC 6803 for Isobutanol Production” Appl Environ Microbiol doi: 10.1128/AEM.02827-12.
Saha R, Verseput AT, Berla BM, Mueller TJ, Pakrasi HB, Maranas CD (2012) “Reconstruction and Comparison of the Metabolic Potential of Cyanobacteria Cyanothece sp. ATCC 51142 and Synechocystis sp. PCC 6803”, PloS ONE 7(10):e48285.
Berla BM, Pakrasi HB (2012) “Up-regulation of plasmid-encoded genes during stationary phase in Synechocystis sp. PCC 6803, a cyanobacterium”, Appl Environ Microbio, doi: 10.1128/AEM.01174-12.
You L, Berla B, Feng X, Page L, Pakrasi H, Tang YJ (2012) “Metabolic pathway discovery and quantification via 13C-isotopomer analysis of proteinogenic amino acids”, J Vis Exp. doi: 10.3791/3583.
Collins AM, Liberton M, Garcia OF, Jones HDT, Pakrasi HB, Timlin JA (2012) “Photosynthetic pigment localization and thylakoid membrane morphology are altered in Synechocystis 6803 phycobilisome mutants”, Plant Physiol, 158: 1600-1609.
Aryal UK, Stockel J, Krovvidi R, Gritsenko MA, Monroe ME, Moore RJ, Koppenaal DW, Smith RD, Pakrasi HB, Jacobs JM (2011) “Dynamic proteomic profiling of a unicellular cyanobacterium Cyanothece ATCC51142 across light-dark diurnal cycles”, BMC Syst Biol, 5(1):194.
Aryal UK, Stöckel J, Welsh EA, Gritsenko MA, Nicora CD, Koppenaal DW, Smith RD, Pakrasi HB, Jacobs JM (2011) “Dynamic Proteome Analysis of Cyanothece sp. ATCC 51142 under Constant Light”, J Proteome Res, 2011 Dec 1. [Epub ahead of print].
Liu H, Huang RY, Chen J, Gross ML, Pakrasi HB (2011) “Psb27, a transiently associated protein, binds to the chlorophyll binding protein CP43 in photosystem II assembly intermediates”, Proc Natl Acad Sci USA, 108(45):18536-4.
Bandyopadhyay A, Elvitigala T, Welsh E, Stöckel J, Liberton M, Min H, Sherman LA, Pakrasi HB (2011) “Novel metabolic attributes of the genus cyanothece, comprising a group of unicellular nitrogen-fixing cyanobacteria”, MBio, 2(5). doi: 10.1128/mBio.00214-11.
McDermott JE, Oehmen CS, McCue LA, Hill E, Choi DM, Stöckel J, Liberton M, Pakrasi HB, Sherman LA (2011) “A model of cyclic transcriptomic behavior in the cyanobacterium Cyanothece sp. ATCC 51142”, Mol Biosyst, 7(8):2407-18.
Wegener KM, Bennewitz S, Oelmüller R, Pakrasi HB (2011) “The Psb32 Protein Aids in Repairing Photodamaged Photosystem II in the Cyanobacterium Synechocystis 6803”, Mol Plant, 4(6):1052-61 .
Liu H, Roose JL, Cameron JC, Pakrasi HB (2011) “A genetically tagged Psb27 protein allows purification of two consecutive photosystem II (PSII) assembly intermediates in Synechocystis 6803, a cyanobacterium:”, J Biol Chem, 286(28):24865-71.
Cameron JC, Pakrasi HB (2011) “Glutathione facilitates antibiotic resistance and photosystem I stability during exposure to gentamicin in cyanobacteria”, Appl Environ Microbiol, 77(10):3547-50.
Liberton M, Austin JR 2nd, Berg RH, Pakrasi HB (2011) “Insights into the complex 3-D architecture of thylakoid membranes in unicellular cyanobacterium Cyanothece sp. ATCC 51142”, Plant Signal Behav, 6(4):566-9.
Stöckel J, Jacobs JM, Elvitigala TR, Liberton M, Welsh EA, Polpitiya AD, Gritsenko MA, Nicora CD, Koppenaal DW, Smith RD, Pakrasi HB (2011) “Diurnal rhythms result in significant changes in the cellular protein complement in the cyanobacterium Cyanothece 51142” PLoS One 6(2):e16680.
Cameron JC, Pakrasi HB, (2011) “Glutathione in Synechocystis 6803: a closer look into the physiology of a ∆gshB mutant”, Plant Signal Behav, 6(1):89-92.
Liberton M, Austin JR 2nd, Berg RH, Pakrasi HB (2011) “Unique thylakoid membrane architecture of a unicellular N2-fixing cyanobacterium revealed by electron tomography”, Plant Physiol, 155(4):1656-66.
Inoue-Kashino N, Kashino Y, Orii H, Satoh K, Terashima I, Pakrasi HB (2011) “S4 Protein Sll1252 Is Necessary for Energy Balancing in Photosynthetic Electron Transport in Synechocystis sp. PCC 6803″ Biochemistry, 50(3):329–39.
Wang W, Ghosh BK, Pakrasi HB (2011) “Identification and modeling of genes with diurnal oscillations from microarray time series data”, IEEE/ACM Trans Comput Biol Bioinform, 8(1):108-21.