Some links that you might find useful:
The Chlamydomonas Genetics Center
The JGI Chlamy genome sequencing project
PROCOM
Li, J. B., Zhang, M., Dutcher, S. K., and Stormo, G. D. (2005) Procom: a web-based tool to compare multiple proteomes. Bioinformatics 21: 1693-1694. PMID: 15564299
GreenGenie2
Kwan, A. Kulp, D., Dutcher, S.K., and Stormo, G.D. Improving Gene-finding in Chlamydomonas reinhardtii: GreenGenie2. BMC Genomics, 10, e210
Colorfy
Lin, H., Kwan, A., and Dutcher, S.K. The nicotinamide pathway in Chlamydomonas and its regulation, submitted