Skip to content
Skip to search
Skip to footer
- Williford EE, Xue YP, Tang WK, Li R, Jones KV, Blake KS, Blaine HC, Lian X, Stallings CL, Tolia NH, Dantas G, Wencewicz TA (2025) C10-Benzoate esters of anhydrotetracycline inhibit tetracycline destructases and recover tetracycline antibacterial activity. ACS Infect Dis (in press)
- Jiang J, Gwee J, Fang J, Leichter SM, Sanders D, Ji X, Song J, Zhong X (2024) Substrate specificity and protein stability drive the divergence of plant-specific DNA methyltransferases. Science Adv 10, eadr2222
- Lopatto EDB, Pinkner JS, Sanick DA, Potter RF, Liu LX, Bazán Villicaña J, Tamadonfar KO, Ye Y, Zimmerman MI, Gualberto NC, Dodson KW, Janetka JW, Hunstad DA, Hultgren SJ (2024) Conformational ensembles in Klebsiella pneumoniae FimH impact uropathogenesis. Proc Natl Acad Sci USA 121, e2409655121
- Puray-Chavez M, Eschbach JE, Xia M, LaPak KM, Zhou Q, Jasuja R, Pan J, Xu J, Zhou Z, Mohammed S, Wang Q, Lawson DQ, Djokic S, Hou G, Ding S, Brody SL, Major MB, Goldfarb D, Kutluay SB (2024) A basally active cGAS-STING pathway limits SARS-CoV-2 replication in a subset of ACE2 positive airway cell models. Nature Commun 15, 8394
- Kitainda V, Jez JM (2024) Kinetic and catalytic mechanism of the methionine-derived glucosinolate biosynthesis enzyme methylthioalkylmalate synthase. J Biol Chem 300, 107814
- Ranaivoarisoa TO, Bai W, Karthikeyan R, Steele H, Silberman M, Olabode J, Conners E, Gallagher B, Bose A (2024) Overexpression of RuBisCO form I and II genes in Rhodopseudomonas palustris TIE-1 augments polyhydroxyalkanoate production heterotrophically and autotrophically. Appl Environ Microbiol 90, e0143824
- Ju Y, Liu AE, Oestreich K, Wang T, Topp CN, Ju T (2024) TopoRoot+: computing whorl and soil line traits of field-excavated maize roots from CT imaging. Plant Methods 20, 132
- Conners EM, Rengasamy K, Ranaivoarisoa T, Bose A (2024) The phototrophic purple non-sulfur bacteria Rhodomicrobium spp. are novel chassis for bioplastic production. Microb Biotechnol 17, e14552
- Parthasarathy A, Miranda RR, Bedore TJ, Watts LM, Mantravadi PK, Wong NH, Chu J, Adjei JA, Rana AP, Savka MA, Bulman ZP, Borrego EJ, Hudson AO (2024) Interaction of Acinetobacter sp. RIT 592 induces the production of broad-spectrum antibiotics in Exiguobacterium sp. RIT 594. Front Pharmacol 15, 1456027
- Battle MW, Ewing SF, Dickson C, Obaje J, Edgeworth KN, Bindbeutel R, Antoniou-Kourounioti RL, Nusinow DA, Jones MA (2024) Manipulation of photosensory and circadian signaling restricts phenotypic plasticity in response to changing environmental conditions in Arabidopsis. Mol Plant 17, 1458-71
- Nien TS, Chan TH, Li YY, Liu TS, Shiau YJ, Ho MY (2024) Two cyanobacterial species exhibit stress responses when grown together in visible light or far-red light. mSphere 9, e0025124
- Liu P, Panda K, Edwards SA, Swanson R, Yi H, Pandesha P, Hung YH, Klaas G, Ye X, Collins MV, Renken KN, Gilbertson LA, Veena V, Hancock CN, Slotkin RK (2024) Transposase-assisted target-site integration for efficient plant genome engineering. Nature 631, 593-600
- Blake KS (2024) Missing microbiomes: global underrepresentation restricts who research will benefit. J Clin Invest 134, e183884
- Diehl C, Pinzan CF, de Castro PA, Delbaje E, García Carnero LC, Sánchez-León E, Bhalla K, Kronstad JW, Kim DG, Doering TL, Alkhazraji S, Mishra NN, Ibrahim AS, Yoshimura M, Vega Isuhuaylas LA, Pham LTK, Yashiroda Y, Boone C, Dos Reis TF, Goldman GH (2024) Brilacidin, a novel antifungal agent against Cryptococcus neoformans. mBio 15, e0103124
- Lee CY, Harper CP, Lee SG, Qi Y, Clay T, Aoi Y, Jez JM, Kasahara H, Blodgett JAV, Kunkel BN (2024) Investigating the biosynthesis and roles of the auxin phenylacetic acid during Pseudomonas syringae-Arabidopsis thaliana pathogenesis. Front Plant Sci 15, 1408833
- Yu L, Sussman H, Khmelnitsky O, Rahmati Ishka M, Srinivasan A, Nelson ADL, Julkowska MM (2024) Development of a mobile, high-throughput, and low-cost image-based plant growth phenotyping system. Plant Physiol 196, 810-29
- Harper CP, Day A, Tsingos M, Ding E, Zeng E, Stumpf SD, Qi Y, Robinson A, Greif J, Blodgett JAV (2024) Critical analysis of polycyclic tetramate macrolactam biosynthetic gene cluster phylogeny and functional diversity. Appl Environ Microbiol 90, e0060024
- Elliott K, Veley KM, Jensen G, Gilbert KB, Norton J, Kambic L, Yoder M, Weil A, Motomura-Wages S, Bart RS (2024) CRISPR/Cas9-generated mutations in a sugar transporter gene reduce cassava susceptibility to bacterial blight. Plant Physiol 195, 2566-78
- Holland CK, Jez JM (2024) Fidelity in plant hormone modifications catalyzed by Arabidopsis GH3 acyl acid amido synthetases. J Biol Chem 300, 107421
- Adams MC, Schiltz CJ, Sun J, Hosford CJ, Johnson VM, Pan H, Borbat PP, Freed JH, Thomason LC, Court C, Court DL, Chappie JS (2024) The crystal structure of bacteriophage λ RexA provides novel insights into the DNA binding properties of Rex-like phage exclusion proteins. Nucleic Acids Res 52, 4659-75
- Eschbach JE, Puray-Chavez M, Mohammed S, Wang Q, Xia M, Huang L-C, Shan L, Kutluay SB (2024) HIV-1 capsid stability and reverse transcription are finely balanced to minimize sensing of reverse transcription products via the cGAS-STING pathway. mBio 15, e0034824
- Urs AN, Lasehinde V, Kim L, McDonald E, Yan LL, Zaher HS (2024) Inability to rescue stalled ribosomes results in over activation of the integrated stress response. J Biol Chem 300, 107290
- Kitainda V, Jez JM (2024) 4-Aldrithiol-based photometric assay for detection of methylthioalkylmalate synthase (MAMS) activity. Methods Enzymol 702, 229-245
- King MR, Ruff KM, Lin AZ, Pant A, Farag M, Lalmansingh JM, Wu T, Fossat MJ, Ouyang W, Lew MD, Lundberg E, Vahey MD, Pappu RV (2024) Macromolecular condensation organizes nucleolar sub-phases to set up a pH gradient. Cell 187, 1889-906
- Johnson JMB, Kunkel BN (2024) AefR, a TetR family transcriptional repressor, regulates several auxin responses in Pseudomonas syringae strain PtoDC3000. Mol Plant Microbe Interact 37, 155-165
- Blake KS, Kumar H, Loganathan A, Williford EE, Diorio-Toth L, Xue YP, Tang WK, Campbell TP, Chong DD, Angtuaco S, Wencewicz TA, Tolia NH, Dantas G (2024) Sequence-structure-function characterization of the emerging tetracycline destructase family of antibiotic resistance enzymes. Commun Biol 7, 336
- Sankoh AF, Adjei J, Roberts D, Burch-Smith TM (2024) Comparing methods for detection and quantification of plasmodesmal callose in Nicotiana benthamiana leaves during defense responses. Mol Plant Microbe Interact 37, 427-31
- Calcutt R, Aghli Y, Arinzeh T, Dixit R (2024) A fibrous scaffold for in vitro culture and experimental studies of Physcomitrium patens. Plant Dir 8, e570
- Fan Y, Bilkey N, Bolhuis DL, Slep KC, Dixit R (2024) A divergent TOG domain and oligomerization contribute to SPIRAL2 function in stabilizing microtubule minus ends. Plant Cell 36, 1056-71
- Zhao G, Liu Y, Li L, Che R, Douglass M, Benza K, Angove M, Luo K, Hu Q, Chen X, Henry C, Li Z, Ning G, Luo H (2024) Gene pyramiding for boosted plant growth and broad abiotic stress tolerance. Plant Biotechnol J 22, 678-97
- Blake KS, Schwartz DJ, Paruthiyil S, Wang B, Ning J, Isidean SD, Burns DS, Whiteson H, Lalani T, Fraser JA, Connor P, Troth T, Porter CK, Tribble DR, Riddle MS, Gutiérrez RL, Simons MP, Dantas G (2024) Gut microbiome and antibiotic resistance effects during travelers’ diarrhea treatment and prevention. mBio 15, e0279023
- Zhang N, Venn B, Bailey CE, Xia M, Mattoon EM, Mühlhaus T, Zhang R (2024) Moderate high temperature is beneficial or detrimental depending on carbon availability in the green alga Chlamydomonas reinhardtii. J Exp Bot 75, 979-1003
- Lin AZ, Ruff KM, Dar F, Jalihal A, King MR, Lalmansingh JM, Posey AE, Erkamp NA, Seim I, Gladfelter AS, Pappu RV (2023) Dynamical control enables the formation of demixed biomolecular condensates. Nature Commun 14, 7678
- Ramalingam V, Yu X, Slaughter BD, Unruh JR, Brennan KJ, Onyshchenko A, Lange JJ, Natarajan M, Buck M, Zeitlinger J (2023) Lola-I is a promoter pioneer factor that establishes de novo Pol II pausing during development. Nature Comm 14, 5862
- Knoshaug EP, Sun P, Nag A, Nguyen H, Mattoon EM, Zhang N, Liu J, Chen C, Cheng J, Zhang R, St John P, Umen J (2023) Identification and preliminary characterization of conserved uncharacterized proteins from Chlamydomonas reinhardtii, Arabidopsis thaliana, and Setaria viridis. Plant Direct 7, e527
- Kim SC, Edgeworth KN, Nusinow DA, Wang X (2023) Circadian clock factors regulate the first condensation reaction of fatty acid synthesis in Arabidopsis. Cell Rep 42, 113483
- Zhu DX, Stallings CL (2023) Transcription regulation by CarD in mycobacteria is guided by basal promoter kinetics. J Biol Chem 299, 104724
- Griffiths M, Liu AE, Gunn SL, Mutan NM, Morales EY, Topp CN (2023) A temporal analysis and response to nitrate availability of 3D root system architecture in diverse pennycress (Thlaspi arvense L.) accessions. Front Plant Sci 14, 145389
- Adavi B S, Pandesha PH, B J, Jha SK, Chinnusamy V, Sathee L (2023) Nitrate supply regulates tissue calcium abundance and transcript level of Calcineurin B-like (CBL) gene family in wheat. Plant Physiol Biochem 199, 107724
- Vineeth TV, Krishna GK, Pandesha PH, Sathee L, Thomas S, James D, Ravikiran KT, Taria S, John C, Vinaykumar NM, Lokeshkumar BM, Jat HS, Bose J, Camus D, Rathor S, Krishnamurthy SL, Sharma PC (2023) Photosynthetic machinery under salinity stress: trepidations and adaptive mechanisms. Photosynthetica 61, 73-93
- Flynn AJ, Miller K, Codjoe JM, King MR, Haswell ES (2023) Mechanosensitive ion channels MSL8, MSL9, and MSL10 have environmentally sensitive intrinsically disordered regions with distinct biophysical characteristics in vitro. Plant Direct 7, e515
- Ginell GM, Flynn AJ, Holehouse AS (2023) SHEPHARD: a modular and extensible software architecture for analyzing and annotating large protein datasets. Bioinformatics 39, btad488
- Sorkin ML, Tzeng SC, King S, Romanowski A, Kahle N, Bindbeutel R, Hiltbrunner A, Yanovsky MJ, Evans BS, Nusinow DA (2023) COLD REGULATED GENE 27 and 28 Antagonize the Transcriptional Activity of the RVE8/LNK1/LNK2 Circadian Complex. Plant Physiol 192, 2436-56
- Kumar H, Williford EE, Blake KS, Virgin-Downey B, Dantas G, Wencewicz TA, Tolia NH (2023) Structure of anhydrotetracycline-bound Tet(X6) reveals the mechanism for inhibition of type 1 tetracycline destructases. Commun Biol 6, 423
- Blaine HC, Simmons LA, Stallings CL (2023) Diverse mechanisms of helicase loading during DNA replication initiation in bacteria. J Bacteriol 205, e0048722
- Brauer AB, Shi H, Levin PA, Huang KC (2023) Physiological and regulatory convergence between osmotic and nutrient stress responses in microbes. Curr Opin Cell Biol 81, 102170
- Williford EE, DeAngelo CM, Blake KS, Kumar H, Lam KK, Jones KV, Tolia NH, Dantas G, Wencewicz TA (2023) Structure-based design of bisubstrate tetracycline destructase inhibitors that block flavin redox cycling. J Med Chem 66, 3917-33
- Talat A, Blake KS, Dantas G, Khan AU (2023) Metagenomic insight into microbiome and antibiotic resistance genes of high clinical concern in urban and rural hospital wastewater of northern India origin: a major reservoir of antimicrobial resistance. Microbiol Spectr 11, e0410222
- Liu TS, Wu KF, Jiang HW, Chen KW, Nien TS, Bryant DA, Ho MY (2023) Identification of a far-red light-inducible promoter that exhibits light intensity dependency and reversibility in a cyanobacterium. ACS Synth Biol 12, 1320-30
- Mattoon EM, McHargue W, Bailey CE, Zhang N, Chen C, Eckhardt J, Daum CG, Zane M, Pennacchio C, Schmutz J, O’Malley RC, Cheng J, Zhang R (2023) High-throughput identification of novel heat tolerance genes via genome-wide pooled mutant screens in the model green alga Chlamydomonas reinhardtii. Plant Cell Environ 46, 865-88
- Sorkin ML, Markham KK, Zorich S, Menon A, Edgeworth KN, Ricono A, Bryant D, Bart R, Nusinow DA, Greenham K (2023) Assembly and operation of an imaging system for long-term monitoring of bioluminescent and fluorescent reporters in plants. Plant Methods 19, 19
- Veley KM, Elliott K, Jensen G, Zhong Z, Feng S, Yoder M, Gilbert KB, Berry JC, Lin ZD, Ghoshal B, Gallego-Bartolomé J, Norton J, Motomura-Wages S, Carrington JC, Jacobsen SE, Bart RS (2023) Improving cassava bacterial blight resistance by editing the epigenome. Nature Commun 14, 85
- Blunt EL, Choi J, Sussman H, Christopherson RC, Keen P, Rahmati Ishka M, Li LY, Idrovo JM, Julkowska MM, Van Eck J, Richards EJ (2023) The nuclear lamina is required for proper development and nuclear shape distortion in tomato. J Exp Bot 74, 5500-13
- Zhan J, O’Connor L, Marchant DB, Teng C, Walbot V, Meyers BC (2023) Coexpression network and trans-activation analyses of maize reproductive phasiRNA loci. Plant J 113, 160-73