• Blaine HC, Burke JT, Ravi J, Stallings CS (2022) DciA helices operators exhibit diversity across bacterial phyla.  J Bacteriol (in press)
  • Walker PL, Pakrasi HB (2022) A ubiquitously conserved cyanobacterial protein phosphatase essential for high light tolerance in a fast-growing cyanobacterium.  Microbiol Spectr (in press)
  • Davenport EJ, Bose A (2022) Taxonomic re-evaluation and genomic comparison of novel extracellular electron uptake-capable Rhodovulum visakhapatnamense and Rhodovulum sulfidophilum isolates.  Microorganisms 10, 1235
  • Miller K, Strychalski W, Nickaeen M, Carlsson A, Haswell ES (2022) In vitro experiments and kinetic models of Arabidopsis pollen hydration mechanics show that MSL8 is not a simple tension-gated osmoregulator.  Curr Biol 32, 2921-34
  • Jing H, Korasick DA, Emenecker RJ, Morffy N, Wilkinson EG, Powers SK, Strader LC (2022) Regulation of AUXIN RESPONSE FACTOR condensation and nucleo-cytoplasmic partitioning. Nat Commun 13, 4015
  • Qi M, Berry JC, Veley KW, O’Connor L, Finkel OM, Salas-González I, Kuhs M, Jupe J, Holcomb E, Glavina Del Rio T, Creech C, Liu P, Tringe SG, Dangl JL, Schachtman DP, Bart RS (2022) Identification of beneficial and detrimental bacteria impacting sorghum responses to drought using multi-scale and multi-system microbiome comparisons. ISME J 16, 1957-69
  • Kiang NY, Swingley WD, Gautam D, Broddrick JT, Repeta DJ, Stolz JF, Blankenship RE, Wolf BM, Detweiler AM, Miller KA, Schladweiler JJ, Lindeman R, Parenteau MN (2022) Discovery of chlorophyll d:  isolation and characterization of a far-red cyanobacterium from the original site of Manning and Strain (1943) at Moss Beach, California.  Microorganisms 10, 819
  • Elliott K, Berry JC, Kim H, Bart RS (2022) A comparison of ImageJ and machine learning based image analysis methods to measure cassava bacterial blight disease severity.  Plant Methods 18, 86
  • Jacobs HM, O’Neal L, Lopatto E, Wozniak DJ, Bjarnsholt T, Parsek MR (2022) Mucoid Pseudomonas aeruginosa can produce calcium-gelled biofilms independent of the matrix components Psl and CdrA.  J Bacteriol 204, e0056821
  • Zhang N, Mattoon EM, McHargue W, Venn B, Zimmer D, Pecani K, Jeong J, Anderson CM, Chen C, Berry JC, Xia M, Tzeng SC, Becker E, Pazouki L, Evans B, Cross F, Cheng J, Czymmek KJ, Schroda M, Muehlhaus T, Zhang R (2022) Systems-wide analysis revealed shared and unique responses to moderate and acute high temperatures in the green alga Chlamydomonas reinhardtii.  Commun Biol 5, 460
  • Li C, Hu Y, Wu X, Stumpf SD, Qi Y, D’Alessandro JM, Nepal KK, Sarotti AM, Cao S, Blodgett JAV (2022) Discovery of unusual dimeric piperazyl cyclopeptides encoded by a Lentzea flaviverrucosa DSM 44664 biosynthetic supercluster.  Proc Natl Acad Sci USA 119, e2117941119
  • Johnson VM, Pakrasi HB (2022) Advances in the understanding of the lifecycle of photosystem II.  Microorganisms 10, 836
  • Conners EM, Rengasamy K, Bose A (2022) Electroactive biofilms: how microbial electron transfer enables bioelectrochemical applications.  J Ind Microbiol Biotechnol (in press)
  • Prusa J, Zhu DX, Flynn AJ, Jensen D, Manzano AR, Galburt EA, Stallings CL (2022) Molecular dissection of RbpA-mediated regulation of fidaxomicin sensitivity in mycobacteria. J Biol Chem 298, 101752
  • Johnson VM, Biswas S, Roose JL, Pakrasi HB, Liu H (2022) Psb27, a photosystem II assembly protein, enables quenching of excess light energy during its participation in the PSII lifecycle.  Photosynth Res (in press)
  • Nan GL, Teng C, Fernandes J, O’Connor L, Meyers BC, Walbot V (2022) A cascade of bHLH-regulated pathways program maize anther development.  Plant Cell 34, 1207-25
  • Zhang N, Pazouki L, Nguyen H, Jacobshagen S, Bigge BM, Xia M, Mattoon EM, Klebanovych A, Sorkin M, Nusinow DA, Avasthi P, Czymmek KJ, Zhang R (2022) Comparative phenotyping of two commonly used Chlamydomonas reinhardtii background strains: CC-1690 (21gr) and CC-5325 (The CLiP mutant library background).  Plants 11, 585
  • Codjoe JM, Miller K, Haswell ES (2022) Plant cell mechanobiology: greater than the sum of its parts.  Plant Cell 34, 129-45
  • Wendt KE, Walker P, Sengupta A, Ungerer J, Pakrasi HB (2022) Engineering natural competence into the fast-growing cyanobacterium Synechococcus elongatus UTEX 2973. Appl Environ Microbiol 88, e0188221
  • Wang Y, Coomey J, Miller K, Jensen GS, Haswell ES (2022) Interactions between a mechanosensitive channel and cell wall integrity signaling influence pollen germination in Arabidopsis thaliana.  J Exp Bot 73, 1533-45
  • Yang J, Qi Y, Blodgett JAV, Wencewicz TA (2022) Multifunctional P450 monooxygenase CftA diversifies the clifednamide pool through tandem C-H bond activations. J Nat Prod 85, 47-55
  • Sathee LB, Pandesha PH, Barman D, Adavi BS, Nagar S, Tripathi S, Jha SK, Chinnusamy V (2022) Genome editing targets for improving nutrient use efficiency and nutrient stress adaptation.  Front Genetics 13, 900897
  • Sorkin ML, Nusinow DA (2022) Using tandem affinity purification to identify circadian clock protein complexes from Arabidopsis. Methods Mol Biol 2398, 189-203
  • Basu D, Codjoe J, Veley K, Haswell E (2022) The mechanosensitive ion channel MSL10 modulates susceptibility to Pseudomonas syringae in Arabidopsis thaliana.  Mol Plant Microbe Interact 35, 567-82
  • Pandesha PH, Nagar S, Advani S, Chinnusamy V, Pandey R (2021) Functional annotation of hypothetical proteins involved in multiple stress response in Orzya sativa.  Ind J Agr Sci 91, 7
  • Sankaranarayanan M, Emenecker RJ, Wilby EL, Jahnel M, Trussina IREA, Wayland M, Alberti S, Holehouse AS, Weil TT (2021) Adaptable P body physical states differentially regulate bicoid mRNA storage during early Drosophila development. Dev Cell 56, 2886-901
  • Emenecker RJ, Griffith D, Holehouse AS (2021) Metapredict: a fast, accurate, and easy-to-use predictor of consensus disorder and structure. Biophys J 120, 4312-9
  • Sepulveda-Garcia E, Fulton EC, Parlan EV, O’Connor LE, Fleming AA, Replogle AJ, Rocha-Sosa M, Gendron JM, Thines B (2021) Unique N-terminal interactions connect F-BOX STRESS INDUCED (FBS) proteins to a WD40 repeat-like protein pathway in Arabidopsis (2021) Plants 10, 2228
  • Calcutt R, Vincent R, Dean D, Arinzeh RL, Dixit R (2021) Plant cell adhesion and growth on artificial fibrous scaffolds as an in vitro model for plant development.  Sci Adv 7, eabj1469
  • Anderson CM, Mattoon EM, Zhang N, Becker E, McHargue W, Yang J, Patel D, Dautermann O, McAdam SAM, Tarin T, Pathak S, Avenson TJ, Berry J, Braud M, Niyogi KK, Wilson M, Nusinow DA, Vargas R, Czymmek KJ, Eveland AL, Zhang R (2021) High light and temperature reduce photosynthetic efficiency through different mechanisms in the C4 model Setaria viridisCommun Biol 4, 1092
  • Kitainda V, Jez JM (2021) Structural studies of aliphatic glucosinolate chain-elongation enzymes.  Antioxidants 10, 1500
  • Hines KM, Chaudhari V, Edgeworth KN, Owens TG, Hanson MR (2021) Absence of carbonic anhydrase in chloroplasts affects C3 plant development but not photosynthesis.  Proc Natl Acad Sci USA 118, e2017425119
  • Pardi SA, Nusinow DA (2021) Out of the dark and into the light: a new view of phytochrome photo bodies.  Front Plant Sci 12, 1843
  • Onyshchenko A, Roberts WR, Ruck EC, Lewis JA, Alverson AJ (2021) The genome of a nonphotosynthetic diatom provides insights into the metabolic shift to heterotrophy and constraints on the loss of photosynthesis.  New Phytol 232, 1750-65
  • Qi Y, Nepal KK, Blodgett JAV (2021) A comparative metabologenomic approach reveals mechanistic insights into Streptomyces antibiotic crypticity. Proc Natl Acad Sci USA 118, e2103515118
  • Yang B, Li M, Phillips A, Li L, Ali U, Li Q, Lu S, Hong Y, Wang X, Guo L (2021) Nonspecific phospholipase C4 hydrolyzes phosphosphingolipids and sustains plant root growth during phosphate deficiency. Plant Cell 33, 766-80
  • Puray-Chavez M, LaPak KM, Schrank TP, Elliott JL, Bhatt DP, Agajanian MJ, Jasuja R, Lawson DQ, Davis K, Rothlauf PW, Liu Z, Jo H, Lee N, Tenneti K, Eschbach JE, Shema Mugisha C, Cousins EM, Cloer EW, Vuong HR, VanBlargan LA, Bailey AL, Gilchuk P, Crowe JE Jr, Diamond MS, Hayes DN, Whelan SPJ, Horani A, Brody SL, Goldfarb D, Major MB, Kutluay SB (2021) Systematic analysis of SARS-CoV-2 infection of an ACE2-negative human airway cell.  Cell Rep 36, 109364
  • Rommelfanger SR, Zhou M, Shaghasi H, Tzeng SC, Evans BS, Paša-Tolić L, Umen JG, Pesavento JJ (2021) An improved top-down mass spectrometry characterization of Chlamydomonas reinhardtii histones and their post-translational modifications. J Am Soc Mass Spectrom 32, 1671-88
  • Cox KL, Elliott KR, Harris TM (2021) Creating supportive environments in academia for Black scientists to thrive.  Plant Cell 33, 2112-5
  • Gupta D, Guzman MS, Rengasamy K, Stoica A, Singh R, Ranaivoarisoa TO, Davenport EJ, Bai W, McGinley B, Meacham JM, Bose A (2021) Photoferrotrophy and phototrophic extracellular electron uptake is common in the marine anoxygenic phototroph Rhodovulum sulfidophilum. ISME J 15, 3384-98
  • Kunkel BN, Johnson JMB (2021) Auxin plays multiple roles during plant-pathogen interactions.  Cold Spring Harbor Perspect Biol 13, a040022
  • Friesner J, Colón-Carmona A, Schnoes AM, Stepanova A, Mason GA, Macintosh GC, Ullah H, Baxter I, Callis J, Sierra-Cajas K, Elliott K, Haswell ES, Zavala ME, Wildermuth M, Williams M, Ayalew M, Henkhaus N, Prunet N, Lemaux PG, Yadegari R, Amasino R, Hangarter R, Innes R, Brady S, Long T, Woodford-Thomas T, May V, Sun Y, Dinneny JR (2021) Broadening the impact of plant science through innovative, integrative, and inclusive outreach. Plant Direct 5, e00316
  • Emenecker RJ, Holehouse AS, Strader LC (2021) Sequence determinants of in cell condensate morphology, dynamics, and oligomerization as measured by number and brightness analysis. Cell Commun Signal 19, 65
  • Conners EM, Davenport EJ, Bose A (2021) Revised draft genome sequences of Rhodomicrobium vannielii ATCC 17100 and Rhodomicrobium udaipurense JA643.  Microbiol Resour Announc 10, e00022-21
  • McKinney RM, Valdez R, Ben-Shahar Y (2021) The genetic architecture of larval aggregation behavior in Drosophila. J Neurogenet 25, 1-16
  • Brauer AM, Rogers AR, Ellermeier JR (2021) Twin-arginine translocation (Tat) mutants in Salmonella enterica derivar Typimurium have increased susceptibility to cell wall targeting antibiotics.  FEMS Microbes 2, xtab004
  • Emenecker RJ, Holehouse A, Strader LC (2021) Biological phase separation and bimolecular condensates in plants. Annu Rev Plant Biol 72, 17-46
  • Blake KS, Choi J, Dantas G (2021) Approaches for characterizing and tracking hospital-associated multidrug-resistant bacteria.  Cell Mol Life Sci 78, 2585-606
  • Sorkin ML, Nusinow DA (2021) Time will tell: intercellular communication in the plant clock. Trends Plant Sci 26, 706-19
  • Kinsella RL, Zhu DX, Harrison GA, Mayer Bridwell AE, Prusa J, Chavez SM, Stallings CL (2021) Perspectives and advances in the understanding of tuberculosis. Annu Rev Pathol 16, 377-408
  • Harkess A, McLoughlin F, Bilkey N, Elliott K, Emenecker R, Mattoon E, Miller K, Czymmek K, Vierstra R, Meyers BC, Michael TP (2021)  An improved Spirodela polyrhiza genome and proteomic analyses reveal a conserved chromosomal structure with high abundances of chloroplastic proteins favoring energy production.  J Exp Bot 72, 2491-500
  • Yan LL, Zaher HS (2021) Ribosome-quality control antagonizes the activation of the integrated-stress response on colliding ribosomes.  Mol Cell 81, 614-28
  • Schaffer JE, Kukshal V, Miller JJ, Kitainda V, Jez JM (2021) Beyond x-rays:  an overview of emerging structural biology methods.  Emerging Topics Life Sci 5, 221-30
  • Zhang K, Lee JS, Liu R, Chan ZT, Dawson TJ, De Togni ES, Edwards CT, Eng IK, Gao AR, Goicouria LA, Hall EM, Hu KA, Huang L, Kizhner A, Kodama KC, Lin AZ, Liu JY, Lu AY, Peng OW, Ryu EP, Shi S, Sorkin ML, Walker PL, Wang GJ, Xu MC, Yang RS, Cascella B, Cruz W, Holland CK, McClerkin SA, Kunkel BN, Lee SG, Jez JM (2020) Investigating the reaction and substrate preference of indole-3-acetaldehyde dehydrogenase from the plant pathogen Pseudomonas syringae PtoDC3000.  Biosci Rep 40, BSR20202959
  • Eschbach JE, Elliott JL, Li W, Zadrozny KK, Davis K, Mohammed SJ, Lawson DQ, Pornillos O, Engelman AN, Kutluay SB (2020) Capsid lattice destabilization leads to premature loss of the viral genome and integrase enzyme during HIV-1 infection.  J Virol 95, e00984-20
  • Qi Y, Nepal KK, Greif J, Martini C, Tomlinson C, Markovic C, Fronick C, Blodgett JAV (2020) Draft genome sequences of two polycyclic tetramate macrolactam producers, Streptomyces sp. strains JV180 and SP18CM02.  Microbiol Resour Announc 9, e01066-20
  • Emenecker R, Holehouse AS, Strader LC (2020) Emerging roles for phase separation in plants.  Dev Cell 55, 69-83
  • Thomas EN, Kim KQ, McHugh EP, Marcinkiewicz T, Zaher HS (2020) Alkylative damage of mRNA leads to ribosome stalling and rescue by trans-translation in bacteria.  eLife 9, e61984
  • Elliott JL, Eschbach JE, Kontur PC, Li W, Chavez MP, Townsend D, Lawson DQ, Engelman AN, Kvaratskhelia M, Kutluay SB (2020) Integrase-RNA interactions underscore the critical role of integrase HIV-1 virion morphogenesis.  eLife 9, e54311
  • Gupta D, Guzman MS, Bose A (2020) Extracellular electron uptake by autotrophic microbes: physiological, ecological, and evolutionary implications. J Ind Microbiol Biotech 47, 863-76
  • Schlegel AM, Haswell ES (2020) Charged pore-lining residues are required for normal channel kinetics in the eukaryotic mechanosensitive ion channel MSL1.  Channels 14, 310-25
  • Lee SG, Harline K, Abar O, Akadri SO, Bastian AG, Chen HY, Duan M, Focht CM, Groziak AR, Kao J, Kottapalli JS, Leong MC, Lin JJ, Liu R, Luo JO, Meyer CM, Mo AF, Pahgn SH, Penna V, Raciti CD, Srinath A, Sudhakur S, Tang JD, Cox BR, Holland CK, Cascella B, Cruz W, McClerklin SA, Kunkel BN, Jez JM (2020) The plant pathogen enzyme AldC is a long-chain aliphatic aldehyde dehydrogenase. J Biol Chem 295, 13914-26
  • Colemon A, Harris TM, Ramanathan S (2020) DNA hypomethylation drives changes in MAGE-A gene expression resulting in alteration of proliferative status of cells.  Genes Environ 42, 24
  • Deng Z, Maksaev G, Schlegel AM, Zhang J, Rau M, Fitzpatrick JAJ, Haswell ES, Yuan P (2020) Structural mechanism for gating of a eukaryotic mechanosensitive channel of small conductance.  Nature Commun 11, 3690
  • Roberts R, Liu AE, Wan L, Geiger AM, Hind SR, Hosli HG, Martin GB (2020) Molecular characterization of differences between the tomato immune receptors Flagellin sensing 3 and Flagellin sensing 2.  Plant Physiol 183, 1825-37
  • Singh R, Ranaivoarisoa TA, Gupta D, Bai W, Bose A (2020) Genetic redundancy in iron and manganese transport in the metabolically versatile bacterium Rhodopseudomonas palustris TIE-1.  Appl Environ Micro 86, e01057-20
  • Ganguly A, Zhu CM, Chen W, Dixit R (2020) FRA1 kinesin modulates the lateral stability of cortical microtubules through cellulose synthase-microtubule uncoupling protein.  Plant Cell 32, 2508-24
  • Lee SG, Chung MS, DeMarsilis AJ, Holland CK, Jaswaney RV, Jiang C, Kroboth JHP, Kulshrestha K, Marcelo RZW, Meyyappa VM, Nelson GB, Patel JK, Petronio AJ, Powers SK, Qin PR, Ramachandran M, Rayapati D, Rincon JA, Rocha A, Rodinho Nunes Ferreira JG, Steinbrecher MK, Yao K, Zhang EJ, Zou AJ, Gang M, Sparks M, Cascella B, Cruz W, Jez JM (2020) Structural and biochemical analysis of phosphoethanolamine methyltransferase from the pine wilt nematode Bursaphelenchus xylophilus.  Mol Biochem Parasitol 238, 111291
  • Djami-Tchatchou AT, Harrison GA, Harper CP, Wang R, Prigge M, Estelle M, Kunkel BN (2020) Dual role of auxin in regulating plant defense and bacterial virulence gene expression during Pseudomonas syringae strain DC3000 pathogenesis.  Mol Plant Microbe Interact 33, 1059-71
  • Liu D, Johnson VM, Pakrasi HB (2020) A reversibly induced CRISPRi system targeting photosystem II in the cyanobacterium Synechocystis sp. PCC 6803.  ACS Syn Biol 9, 1441-9
  • Basu D, Shoots JM, Haswell ES (2020) Interactions between the N- and C- termini of mechanosensitive ion channel AtMSL10 are consistent with a three-step mechanism for activating its signaling function.  J Exp Bot 71, 4020-32
  • Trujillo-Hernandez JA, Bariat L, Enders TA, Strader LC, Reichheld JP, Belin C (2020) A glutathione-dependent control of IBA pathway supports Arabidopsis root system adaptation to phosphate deprivation.  J Exp Bot 71, 4843-57
  • Schlegel AM, Haswell ES (2020) Analyzing plant mechanosensitive ion channels expressed in giant E. coli spheroplasts by single channel patch-clamp electrophysiology.  Meth Cell Biol 160, 61-82
  • Kalra I, Wang X, Cvetkovska M, Jeong J, McHargue W, Zhang R, Huener N, Yuan JS, Morgan-Kiss R (2020) Chlamydomonas sp. UWO241 exhibits high cyclic electron flow and rewired metabolism under high salinity.  Plant Physiol 183, 588-601
  • Campbell TP, Sun XQ, Patel VH, Sanz C, Morgan D, Dantas G (2020) The microbiome and resistome of chimpanzees, gorillas, and humans across host lifestyle and geography.  ISME J 14, 1584-99
  • Guo K, Mellinger P, Doan V, Allen J, Pringle RN, Jammes F (2020) Identification of novel regulators of plant transpiration by imaging screening in Helianthus annuus.  J Vis Exp 10.3791/60535
  • Chopra R, Johnson EB, Emenecker R, Cahoon EB, Lyons J, Kliebenstein DJ, Daniels E, Dorn KM, Esfahanian M, Folstad N, Frels K, McGinn M, Ott M, Gallaher C, Altendorf K, Berroyer A, Ismail B, Anderson JA, Wyse DL, Ulmasov T, Sedbrook JC, Marks MD (2020) Identification and stacking of crucial traits required for the domestication of pennycress.  Nature Food 1, 84-91 
  • Schlegel AM, Haswell ES (2020) Plant biomechanics:  no pain, no gain for birch tree stems.  Curr Biol 30, R164-6
  • Emenecker R, Strader LC (2020) Auxin-abscisic acid interactions in plant growth and development.  Biomolecules 10, 281
  • Powers SK, Strader LC (2020) Regulation of auxin transcriptional responses.  Dev Dyn 249, 483-95
  • Kambhampati S, Aznar-Moreno JA, Hostetler C, Caso T, Baily SR, Hubbard AH, Durrett TP, Allen DK (2019) On the inverse correlation of protein and oil: examining the effects of altered central carbon metabolism on seed composition using soybean fast neutron mutants.  Metabolites 10, 18
  • Roberts R, Mainiero S, Powell AF, Liu AE, Shi K, Hind SR, Strickler SR, Collmer A, Martin GB (2019) Natural variation for unusual host responses and flagellin-mediated immunity against Pseudomonas syringae in genetically diverse tomato accessions.  New Phytol 223, 447-61
  • Lopatto E, Choi J, Colina A, Ma L, Howe A, Hinsa-Leasure S (2019) Characterizing the soil microbiome and quantifying antibiotic resistance gene dynamics in agricultural soil following swine CAFO manure application.  PLoS One 14, e0220770
  • Verma M, Choi J, Cottrell KA, Lavagnino Z, Thomas EN, Pavlovic-Djuranovic S, Szczesny P, Piston DW, Zaher HS, Puglisi JD, Djuranovic S (2019) A short-translational ramp determines the efficiency of protein synthesis. Nature Commun 10, 5774
  • Yan LL, Simms CL, McLoughlin F, Vierstra RD, Zaher HS (2019) Oxidation and alkylation stresses activate ribosome-quality control.  Nature Commun 10, 5611
  • Gupta D, Sutherland MC, Rengasamy K, Meacham J, Kranz RG, Bose A (2019) Photoferrotrophs produce a PioAB electron conduit for extracellular electron uptake.  mBio 10, e02668-19
  • Holland CK, Westfall CS, Schaffer JE, De Santiago A, Zubieta C, Alvarez S, Jez JM (2019) Brassicaceae-specific Gretchen Hagen 3 acyl acid amido synthetases conjugate amino acids to chorismate, a precursor of aromatic amino acids and salicylic acid.  J Biol Chem 294, 16855-64
  • Balkunde R, Foroughi L, Ewan E, Emenecker R, Cavalli V, Dixit R (2019) Mechanism of microtubule plus-end tracking by the plant-specific SPR1 protein and its development as a versatile plus-end marker.  J Biol Chem 294, 16374-84
  • Weisz DA, Johnson VM, Niedzwiedzki DM, Shinn MK, Liu H, Klitze CF, Gross ML, Blankenship RE, Lohman TM, Pakrasi HB (2019) A novel chlorophyll protein complex in the repair cycle of photosystem II.  Proc Natl Acad Sci USA 116, 21907-13
  • Davenport EJ, Neudeck MJ, Matson PG, Bullerjahn GS, Davis TW, Wilhelm SW, Denney MK, Krausfeldt LE, Stough JMA, Meyer KA, Dick GH, Johengen TH, Lindquist E, Tringe SG, McKay RML (2019) Metatranscriptomic analyses of diel metabolic functions during a microcystis bloom in western Lake Erie (United States).  Front Microbiol 10, 2081
  • Nagarajan A, Zhou M, Nguyen AY, Liberton M, Kedia K, Shi T, Piehowski P, Shukla A, Fillmore TL, Nicora C, Smith RD, Koppenaal DW, Jacobs JM, Pakrasi HB (2019) Proteomic insights into phycobilisome degradation, a selective and tightly controlled process in the fast-growing cyanobacterium Synechococcus elongatus UTEX2973.  Biomolecules 9, 374
  • Yan LL,  Zaher HS (2019) How do cells cope with RNA damage and its consequences? J Biol Chem 294, 15158-71
  • Thomas EN, Simms CL, Keedy HE, Zaher H (2019) Insights into the base pairing preferences of 8-oxoguanosine on the ribosome.  Nucleic Acids Res 47, 9857-79
  • Wolf BM, Blankenship RE (2019) Far-red light acclimation in diverse oxygenic photosynthetic organisms.  Photosynth Res 142, 349-59
  • Powers SK, Holehouse AS, Korasick DA, Schreiber KH, Clark NM, Jing H, Emenecker R, Han S, Tycksen E, Hwang I, Sozzani R, Jez JM, Pappu RV, Strader LC (2019) Nucleo-cytoplasmic partitioning of ARF proteins controls auxin responses in Arabidopsis thaliana.  Mol Cell 76, 177-90
  • Zhu D, Bullock J, He Y, Sun X (2019) Cwp22, a novel peptidoglycan cross-linking enzyme, plays pleiotropic roles in Clostridioles difficile.  Environ Micro 21, 3076-90
  • Michniewicz M, Ho CH, Enders TA, Floro E, Damodoran S, Gunther LK, Powers SKFrick EM, Topp CN, Frommer WB, Strader LC (2019) Transporter of IBA1 links auxin and cytokinin to influence root architecture.  Dev Cell 50, 599-609
  • Anthony WE, Carr RR, DeLorenzo DM, Campbell TP, Shang Z, Foston M, Moon TS, Dantas G (2019) Development of Rhodococcus opacus as a chassis for lignin valorization and bioproduction of high-value compounds.  Biotechnol Biofuels 12, 192
  • Simms CL, Yan LL, Qiu JK, Zaher HS (2019) Ribosome collisions result in +1 frameshifting in the absence of no-go decay.  Cell Rep 28, 1679-89
  • Lou W, Wolf BM, Blankenship RE, Liu H (2019) Cu+ contributes to the orange carotenoid protein-related phycobilisome fluorescence quenching and photoprotection in cyanobacteria.  Biochemistry 58, 3109-15
  • Zhu DX, Garner AL, Galburt EA, Stallings CL (2019) CarD contributes to diverse gene expression outcomes throughout the genome of Mycobacterium tuberculosis.  Proc Natl Acad Sci USA 116, 13573-81
  • Yeh A, Conners EM, Ramos-Jimenez RG, Firek B, Novak EA, Rogers MB, Cheek R, Ozolek J, Mollen KP, Morowitz MJ (2019) Plant-based enteral nutrition modified the gut microbiota and improves outcomes in murine models of colitis.  Cell Mol Gastroenterol Hepatol 7, 872-4
  • Roell GW, Carr RR, Campbell T, Shang Z, Henson WR, Czajka JJ, Martin HG, Zhang F, Foston M, Dantas G, Moon TS, Tang YJ (2019) A concerted systems biology analysis of phenol metabolism in Rhodococcus opacus PD630.  Metab Engr 55, 120-30
  • Borodinov N, Bilkey N, Foston M, Ievlev AV, Belianinov A, Jesse S, Vasudevan RK, Kalinin SV, Ovchinnikova OS (2019) Application of pan-sharpening algorithm for correlative multimodal imaging using AFR-IR.  Comp Materials 5, 49
  • Flentie K, Harrison GA, Tukenmez H, Livny J, Good JAD, Sarkar S, Zhu DX, Kinsella RL, Weiss LA, Solomon SD, Schene ME, Hansen MR, Cairns AG, Kulen M, Wixe T, Lindgren AEG, Chorell E, Bengtsson C, Krishnan KS, Hultgren SJ, Larsson C, ALmqvist F, Stallings CL (2019) Chemical disarming of isoniazid restistance in Mycobacterium tuberculosis.  Proc Natl Acad Sci USA 116, 10510-7
  • Taylor I, Baer J, Calcutt R, Walker JC (2019) Regulation of abscission signaling.  Plant Physiol 180, 1219-29
  • Huang H, McLoughlin KE, Sorkin ML, Burgie ES, Bindbeutel RK, Vierstra RD, Nusinow DA (2019) PCH1 regulates light, temperature, and circadian signaling as a structural component of phytochrome B-photobodies in Arabidopsis.  Proc Natl Acad Sci USA 116, 8603-8
  • Hu Y*, Qi Y*, Stumpf S, D’Alessandro JM, Blodgett JAV (2019) Bioinformatic and functional evaluation of actinobacterial piperazate metabolism.  ACS Chem Biol 14, 696-703
  • Niedzwiedzki DM, Wolf BM, Blankenship RE (2019) Excitation energy transfer in the far-red absorbing violaxanthin/vaucheriaxanthin chlorophyll a complex from the eustigmatophyte alga FP5.  Photosynth Res 140, 337-54
  • Yan LL, Zaher HS (2019) Ubiquitin –  a beacon for all during quality control of the ribosome.  EMBO J 38, e101633
  • Kim SC, Nusinow DA, Sorkin ML, Pruneda-Paz J, Wang X (2019) Interaction and regulation between lipid mediator phosphatidic acid and circadian clock regulators in Arabidopsis.  Plant Cell 31, 399-416
  • Gupta D, Guzman MS, Bose A (2019) Draft genome sequence of a marine photoferrotrophic bacterium, Rhodovulum robiginosum DSM 12329 (T).  Microbiol Resour Announc 8, e01684-18
  • Onyshchenko A, Ruck EC, Nakov T, Alverson AJ (2019) A single loss of photosynthesis in the diatom order Bacillariales (Bacillariophyta).  Am J Bot 106, 560-572