Useful Links – Enzyme information database – Salis Lab RBS and promoter calculator – Database for E. coli genome, transcriptional regulation, and metabolic pathways – Similar to EcoCyc, but for many other organisms – UNAFold (combination of mFold and DINAMelt software): RNA folding and DNA hybridization/melting prediction – Kyoto Encyclopedia of Genes and Genomes – RegulonDB, E. coli Transcriptional Network – Standard Registry of Biological Parts – Plasmid Database – Database of useful biological numbers – Synthetic Biology Engineering Research Center – BIOFAB: International Open Facility Advancing Biotechnology – RNAiFold: RNA inverse folding problem- find RNA sequence using given target secondary structure – Codon Optimizer for prokaryotes – Gene2Oligo: oligonucleotide design for in vitro gene synthesis – The Coli Genetic Stock Center – IntraRNA- RNA-RNA Interaction calculator – CopraRNA – sRNA Targeting – Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes​ – List of Tools for Identifying Repeats, Secondary Structure, and Melting Temperature for RNA & DNA – Engineering Biology Research Consortium – Podcast on various topics in Engineering Biology