1. Palanisamy A, Giri T, Jiang J, Bice AR, James D. Quirk JD, Conyers SB, Maloney SE, Raghuraman N, Bauer AQ, Garbow JR, Wozniak DF, “Transient uterine hypercontractility causes fetal cerebral oxidative stress and enduring mitochondrial and behavioral abnormalities in the adolescent male rat offspring”. J. Clinical Investigation, In press,  accepted March 2020
  2. Lee J, Stile C, Bice AR,  Rosenthal Z, Yan P, Snyder AZ, Lee J-M, Bauer AQ, “Opposed hemodynamic responses following increased excitation and parvalbumin-based inhibition”,  J. Cerebral Blood Flow and Metabolism, 2020              
  3. Orukari I, Siegel JS, Warrington NM, Baxter GA, Bauer AQ, Shimony JS, Rubin JB, Culver JP, “Altered hemodynamics contribute to local but not remote functional connectivity disruption due to glioma growth”, J. Cerebral Blood Flow and Metabolism, 40(1),2020
  4. Rosenthal ZP, Raut R, Yan P, Koko D, Kraft AW, Czerniewski L, Acland B, Mitra A, Snyder LH, Bauer AQ, Snyder AZ, Culver JP, Raichle ME, Lee J-M, “Local perturbations of cortical excitability propagate differentially through large-scale functional networks”,  Cerebral Cortex, 30(5),2020


  1. Griffin P, Dimitry JM, Sheehan PW, Lananna BV, Guo C, Robinette ML, Hayes ME, Cedeno MR, Hadarajah CJ, Ezerskiy LA, Colonna M, Zhang J, Bauer AQ, Burris TP, Musiek ES, “Circadian clock protein Rev-erbα regulates neuroinflammation”, PNAS, 116(11), 2019
  2. Brier LM*, Landsness EC*, Snyder AZ, Wright PW, Baxter GA, Bauer AQ, Lee J-M, Culver JP, “Separability of Calcium Slow Waves and Functional Connectivity During Wake, Sleep, and Anesthesia”, Neurophotonics,  6(3), 2019
  3. Snyder AZ and Bauer AQ, “Mapping structure-function relationships in the brain”, Biological Psychiatry: Cognitive Neuroscience and Neuroimaging, 4(6), 2019


  1. Mitra A, Kraft AW, Wright PW, Acland B, Snyder AZ, Czerniewski L, Rosenthal Z, Bauer AQ, Snyder L, Culver JP, Lee J-M, Raichle ME, “Distinct temporal and laminar relationships in spontaneous infra-slow brain activity”, Neuron, 98(2), 2018
  2. Quattromani MJ, Hakon JC, Rauch U, Bauer AQ*, Wieloch T*, “Changes in resting-state functional connectivity after stroke in a mouse brain lacking extracellular matrix components”, Neurobiology of Disease, 112(1),  2018                                         
    *=Joint Senior/Corresponding Author
  3. Hakon JC, Quattromani MJ, Sjolung C, Tomasevic G, Carey L, Lee J-M, Ruscher K, Wieloch T*, Bauer AQ*, “Multisensory stimulation improves functional recovery and resting-state functional connectivity in the mouse brain after stroke”, NeuroImage: Clinical, 17(1), 2018  *=Joint Senior/Corresponding Author
  4. Bauer AQ*, Kraft AW, Baxter GA, Wright PW, Reisman MD, Bice AR, Park JP, Bruchas MR, Snyder AZ, Lee, J-M, Culver JP, “Effective Connectivity Measured Using Optogenetically Evoked Hemodynamic Signals Exhibits Topography Distinct from Resting State Functional Connectivity in the Mouse“, Cerebral Cortex, 28(1), 2018
    *=Corresponding Author
  5. Kraft AW, Bauer AQ, Culver JP, Lee J-M, “Sensory Deprivation Following Focal Ischemia Accelerates Remapping and Behavioral Recovery through Arc-Dependent Synaptic Plasticity“, Science Translational Medicine, 10(426), 2018


  1. Wright PW, Brier LM, Bauer AQ, Baxter GA, Kraft AW, Reisman MD, Bice AR, Snyder AZ, Lee J-M, Culver JP, “Functional Connectivity Structure of Cortical Calcium Dynamics in Anesthetized and Awake Mice“, PLoS One, 12(10): e0185759, 2017
  2. Kraft AW, Mitra A, Bauer AQ, Snyder AZ, Raichle ME, Culver JP, Lee J-M, “Visual experience during the critical period sculpts whole-brain organization of spontaneous infra-slow activity through an Arc-dependent mechanismPNAS, 114(46), 2017
  3. Wright PW, Archambault AS, Peek S, Bauer AQ, Culican SM, Ances BA, Culver JP, Wu GF, “Functional Connectivity Alterations in a Murine Model of Optic Neuritis“, Experimental Neurology, 295, 2017
  4. Reisman MR, Markow ZE, Bauer AQ, Culver JP, “Structured Illumination Diffuse Optical Tomography for Noninvasive Functional Neuroimaging in Mice“, Neurophotonics, 4(2), 2017


  1. Musiek EM, Xiong D, Patel T, Sasaki Y, Wang Y, Bauer AQ, Singh R, Finn S, Culver JP, Milbrandt J Holtzman DM, “Nmnat1 protects neuronal function without altering phospho-tau pathology in a mouse model of tauopathy“, Annals of Clinical and Translational Neurology, 3(6), 2016
  2. Bumstead JR, Bauer AQ, Wright PW, Culver JP, “Cerebral Functional Connectivity and Mayer Waves in Mice: Phenomena and Separability”, J. Cerebral Blood Flow and Metabolism, 37(2), 2016


  1. Bergonzi KM, Bauer AQ, Wright PW, Culver JP, “Mapping functional connectivity using cerebral blood flow in the mouse brain”, J. Cerebral Blood Flow and Metabolism 35(1), 2015


  1. Bauer AQ*, Kraft AW, Wright PW, Lee J-M, Culver JP, “Optical Imaging of disrupted functional connection following ischemic stroke in mice“, NeuroImage 99, 2014.       
    * = Corresponding Author
  2. Liao F, Hori Y, Hudry E, Bauer AQ, Jiang H, Mahan T, Lefton K, Zhang T, Dearborn J, Kim J, Culver JP, Betensky R, Wozniak D, Hymann B, Holtzman DM, “Anti-ApoE antibody given after plaque onset decreases Aβ accumulation and improves brain function in a mouse model of Aβ amyloidosis“. J. Neuroscience 34(21), 2014
  3. Nasiriavanaki M, Xia J, Wan H, Bauer AQ, Culver JP, Wang LV, “High-resolution photoacoustic resting-state functional connectivity imaging of the mouse brain“. Proceedings of the National Academy of Sciences, 111(1), 2014.


  1. Musiek ES, Lim MM, Yang G, Bauer AQ, Qi L, Roh JH, Ortiz-Gonzalez X, Culver JP, Herzog ED, Hogenesch JB, Dikranian K, Giasson BI, Weaver DR, Holtzman DM, Fitzgerald GA, “Circadian clock proteins regulate neuronal redox homeostasis and neurodegeneration”, J. Clinical Investigation 123(12), 2013.
  2. Liu Y, Akers WJ, Bauer AQ, Mondal S, Gullicksrud K, Sudlow GP, Culver JP, Achilefu S, “Intraoperative detection of liver tumors aided by a fluorescence goggle system and multimodal imaging”, Analyst, 138, 2013.


  1. Bero AW*, Bauer AQ*, Stewart FR, White BR, Cirrito JR, Raichle ME, Culver JP, Holtzman DM, “Bidirectional relationship between functional connectivity and A-Beta plaque deposition in mouse brain“, J. Neuroscience, 32(12), 2012                         
    *=Co-First Authors; Featured Article
  2. Bauer AQ*, Nothdurft RE, Erpelding TN, Wang LV, Culver JP, “Multimodality imaging: diffuse optical tomography and photoacoustic tomography” in Emerging Imaging Technologies for Medicine, Anastasio MA, LaRiviere PJ, Eds., Taylor Francis/CRC Press: New York, 2012, Invited Book Chapter,                   
    *=Corresponding Author


  1. Liu Y, Bauer AQ, Akers W, Sudlow G, Liang K, Shen D, Berezin M, Culver JP, Achilefu S, “Hands-free, Wireless Goggle for Near-infrared Fluorescence and Real-time Image-guided SurgerySurgery 149(5), 2011
  2. White BR*, Bauer AQ*, Snyder AZ, Schlaggar BL, Lee J-M, Culver JP, “Imaging of functional connectivity in the mouse brainPLoS One, 6(1), 2011                               
    *=Co-First Authors
  3. Anderson CC, Bauer AQ, Marutyan KR, Holland MR, Pakula M, Bretthorst GL, Laugier P, Miller JG, “Phase velocity of cancellous bone negative dispersion arising from fast and slow waves, interference, diffraction and phase cancellation at piezoelectric receiving elements” in Bone Quantitative Ultrasound, Laugier P, Haiat G, Eds., Springer Science+Buisness Media B.V.: New York, 2011 (Invited Book Chapter)


  1. Holland MR, Gibson AA, Bauer AQ, Peterson LR, Schaffer JE, Bach RG, Cresci S, Miller JG, “Echocardiographic tissue characterization demonstrates differences in the left and right sides of the ventricular septumUltrasound in Med. & Biol. 36(10), 2010.
  2. Anderson CC, Bauer AQ, Holland MR, Pakula M, Laugier P, Bretthorst GL, Miller JG, “Inverse problems in cancellous bone: Estimation of the ultrasonic properties of fast and slow waves using Bayesian probability theoryJ. Acoustical Society of America 128(5), 2010.


  1. Bauer AQ, Anderson CC, Holland MR, Miller JG, “Bone Sonometry: reducing phase aberration to improve estimates of broadband ultrasonic attenuation (BUA)” J. Acoustical Society of America 125(1), 2009.


  1. Bauer AQ, Marutyan KR, Holland MR, Miller JG, “Negative dispersion in bone: The role of interference in measurements of the apparent phase velocity of two temporally overlapping signalsJ. Acoustical Society of America 123(4), 2008.


  1. Bauer AQ, Marutyan KR, Holland MR, and Miller JG, “Is the Kramers-Kronig causal relationship between ultrasonic attenuation and dispersion maintained in the presence of apparent losses due to phase cancellation?J. Acoustical Society of America 122(1), 2007.